{ "type": "genome", "identifier": "GCF_025994615.1", "organism": "Komagataeibacter xylinus NBRC 15237", "title": "Komagataeibacter xylinus NBRC 15237", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025994615.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036720", "wgs_master": "BAQT00000000.1", "refseq_category": "na", "taxid": "1220579", "species_taxid": "28448", "organism_name": "Komagataeibacter xylinus NBRC 15237", "infraspecific_name": "strain=NBRC 15237", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599461v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025994615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/994/615/GCF_025994615.1_ASM2599461v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3626170", "genome_size_ungapped": "3626170", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "576", "contig_count": "576", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025994615.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3615", "protein_coding_gene_count": "3420", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter xylinus NBRC 15237" ], "sample_taxid": [ "1220579" ], "sample_host_organism": [], 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003207865.1", "gtdb_species": "s__Komagataeibacter sucrofermentans", "ani": 92.7304, "matched_fragments": 875, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003207795.1", "gtdb_species": "s__Komagataeibacter nataicola", "ani": 92.5393, "matched_fragments": 879, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.284, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 27.5, "optimum_tmp": 30.0, "optimum_ph": 5.9, "genome_size": 3744385.111, "gc_content": 59.869, "coding_genes": 3362.25, "rRNA16S_genes": 4.5, "tRNA_genes": 57.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Komagataeibacter", "xylinus", "NBRC", "15237" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }