{ "type": "genome", "identifier": "GCF_025995155.1", "organism": "Gluconobacter wancherniae NBRC 103581", "title": "Gluconobacter wancherniae NBRC 103581", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025995155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036729", "wgs_master": "BARC00000000.1", "refseq_category": "na", "taxid": "656744", "species_taxid": "1307955", "organism_name": "Gluconobacter wancherniae NBRC 103581", "infraspecific_name": "strain=NBRC 103581", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599515v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025995155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/995/155/GCF_025995155.1_ASM2599515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2785627", "genome_size_ungapped": "2785627", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025995155.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2607", "protein_coding_gene_count": "2520", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconobacter wancherniae NBRC 103581" ], "sample_taxid": [ "656744" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2785199", "Number of Sequences": "16", "Longest Sequences (bp)": "620124", "N50 (bp)": "260628", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.3", "Number of CDSs": "2565", "Average Protein Length": "325.5", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconobacter wancherniae", "strain": "strain=LMG27016", "accession": "GCA_015244585.1", "taxid": 1307955, "species_taxid": 1307955, "relation_to_type": 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"organism_name": "Acidomonas methanolica", "strain": "strain=NBRC 104435", "accession": "GCA_007988925.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 76.8522, "matched_fragments": 99, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=MB58", "accession": "GCA_000617865.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 76.7826, "matched_fragments": 101, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007988885.1", "gtdb_species": "s__Gluconobacter_B wancherniae", "ani": 99.9997, "matched_fragments": 919, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter_B", 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