{
    "type": "genome",
    "identifier": "GCF_025995215.1",
    "organism": "Asaia bogorensis NBRC 16594",
    "title": "Asaia bogorensis NBRC 16594",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tokyo University of Agriculture",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025995215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036695",
        "wgs_master": "BAPU00000000.1",
        "refseq_category": "na",
        "taxid": "1231624",
        "species_taxid": "91915",
        "organism_name": "Asaia bogorensis NBRC 16594",
        "infraspecific_name": "strain=NRIC 0311",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/03",
        "asm_name": "ASM2599521v1",
        "asm_submitter": "Tokyo University of Agriculture",
        "gbrs_paired_asm": "GCA_025995215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/995/215/GCF_025995215.1_ASM2599521v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3310003",
        "genome_size_ungapped": "3310003",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025995215.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "2975",
        "protein_coding_gene_count": "2883",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-03",
    "dateModified": "2022-08-03",
    "datePublished": "2022-08-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Asaia bogorensis NBRC 16594"
        ],
        "sample_taxid": [
            "1231624"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.936 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3308966",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "457686",
        "N50 (bp)": "263596",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "2914",
        "Average Protein Length": "329.8",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Asaia bogorensis",
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                "accession": "GCA_001547995.1",
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                "species_taxid": 91915,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_007989265.1",
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                "species_taxid": 91915,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Asaia lannensis",
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                "accession": "GCA_024054035.1",
                "taxid": 415421,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia siamensis",
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                "accession": "GCA_014635085.1",
                "taxid": 110479,
                "species_taxid": 110479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8083,
                "matched_fragments": 643,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia platycodi",
                "strain": "strain=JCM 25414",
                "accession": "GCA_000614545.1",
                "taxid": 610243,
                "species_taxid": 610243,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 647,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia prunellae",
                "strain": "strain=JCM 25354",
                "accession": "GCA_000613885.1",
                "taxid": 610245,
                "species_taxid": 610245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7184,
                "matched_fragments": 512,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia astilbis",
                "strain": "strain=JCM 15831",
                "accession": "GCA_000613845.1",
                "taxid": 610244,
                "species_taxid": 610244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6032,
                "matched_fragments": 491,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gluconobacter roseus",
                "strain": "strain=NBRC 3990",
                "accession": "GCA_006538885.1",
                "taxid": 586239,
                "species_taxid": 586239,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4066,
                "matched_fragments": 182,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001547995.1",
                "gtdb_species": "s__Asaia bogorensis",
                "ani": 99.9999,
                "matched_fragments": 1039,
                "total_fragments": 1076,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Asaia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.04",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900465345.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003994335.1",
                "gtdb_species": "s__Asaia sp003994335",
                "ani": 82.5378,
                "matched_fragments": 691,
                "total_fragments": 1076,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Asaia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_006538885.1",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
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        "doubling_h": null,
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        "coding_genes": 2718.333,
        "rRNA16S_genes": 5.0,
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        "sporulation": null,
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        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
        "Asaia",
        "bogorensis",
        "NBRC",
        "16594"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}