{ "type": "genome", "identifier": "GCF_025995275.1", "organism": "Acidomonas methanolica", "title": "Acidomonas methanolica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025995275.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036693", "wgs_master": "BAPS00000000.1", "refseq_category": "na", "taxid": "437", "species_taxid": "437", "organism_name": "Acidomonas methanolica", "infraspecific_name": "strain=NRIC 0498", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599527v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025995275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/995/275/GCF_025995275.1_ASM2599527v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3699312", "genome_size_ungapped": "3699312", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "1033", "contig_count": "1033", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025995275.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4016", "protein_coding_gene_count": "3607", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidomonas methanolica" ], "sample_taxid": [ "437" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kozakia baliensis", "strain": "strain=NBRC 16664", "accession": "GCA_007989365.1", "taxid": 153496, "species_taxid": 153496, "relation_to_type": "type", "validated": true, "ani": 77.9873, "matched_fragments": 140, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter sucrofermentans", "strain": "strain=LMG 18788", "accession": "GCA_003207865.1", "taxid": 1053551, "species_taxid": 1053551, "relation_to_type": "type", "validated": true, "ani": 77.8248, "matched_fragments": 158, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004346035.1", "gtdb_species": "s__Acidomonas methanolica", "ani": 99.9954, "matched_fragments": 849, "total_fragments": 851, "gtdb_taxonomy": 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