{ "type": "genome", "identifier": "GCF_025995515.1", "organism": "Acetobacter peroxydans NBRC 13755", "title": "Acetobacter peroxydans NBRC 13755", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025995515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036685", "wgs_master": "BAPK00000000.1", "refseq_category": "na", "taxid": "1307915", "species_taxid": "104098", "organism_name": "Acetobacter peroxydans NBRC 13755", "infraspecific_name": "strain=NBRC 13755", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599551v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025995515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/995/515/GCF_025995515.1_ASM2599551v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2720656", "genome_size_ungapped": "2720656", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "305", "contig_count": "305", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025995515.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2630", "protein_coding_gene_count": "2483", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter peroxydans NBRC 13755" ], "sample_taxid": [ "1307915" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.771 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2711437", "Number of Sequences": "225", "Longest Sequences (bp)": "151169", "N50 (bp)": "28217", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "2337", "Average Protein Length": "317.8", "Coding Ratio (%)": "82.2", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter peroxydans", "strain": "strain=LMG 1635", "accession": "GCA_011516745.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": 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415, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 79.4595, "matched_fragments": 350, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.4554, "matched_fragments": 350, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.4383, "matched_fragments": 352, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter okinawensis", "strain": "strain=JCM 25146", "accession": "GCA_000613865.1", "taxid": 1076594, "species_taxid": 1076594, "relation_to_type": "type", "validated": true, "ani": 79.1614, "matched_fragments": 315, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848", "accession": "GCA_011516865.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 79.037, "matched_fragments": 310, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter senegalensis", "strain": "strain=LMG 23690", "accession": "GCA_001580995.1", "taxid": 446692, "species_taxid": 446692, "relation_to_type": "type", "validated": true, "ani": 78.5762, "matched_fragments": 219, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter sucrofermentans", "strain": "strain=LMG 18788", "accession": "GCA_003207865.1", "taxid": 1053551, "species_taxid": 1053551, "relation_to_type": "type", "validated": true, "ani": 77.8783, "matched_fragments": 197, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.0367, "matched_fragments": 103, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.0117, "matched_fragments": 103, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", 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207340, "relation_to_type": "type", "validated": true, "ani": 75.9176, "matched_fragments": 67, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006539345.1", "gtdb_species": "s__Acetobacter peroxydans", "ani": 99.9941, "matched_fragments": 794, "total_fragments": 803, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000613285.1", "gtdb_species": "s__Acetobacter papayae", "ani": 86.2694, "matched_fragments": 621, "total_fragments": 803, "gtdb_taxonomy": 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