{ "type": "genome", "identifier": "GCF_025996515.1", "organism": "Rhizohabitans arisaemae", "title": "Rhizohabitans arisaemae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kitasato Institute for Life Sciences, Kitasato University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025996515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00209878", "wgs_master": "BLRH00000000.1", "refseq_category": "reference genome", "taxid": "2720610", "species_taxid": "2720610", "organism_name": "Rhizohabitans arisaemae", "infraspecific_name": "strain=K14-0274", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/29", "asm_name": "ASM2599651v1", "asm_submitter": "Kitasato Institute for Life Sciences, Kitasato University", "gbrs_paired_asm": "GCA_025996515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/996/515/GCF_025996515.1_ASM2599651v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8328102", "genome_size_ungapped": "8327881", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025996515.1-RS_2024_05_18", "annotation_date": "2024-05-18", "total_gene_count": "7336", "protein_coding_gene_count": "7189", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-29", "dateModified": "2022-08-29", "datePublished": "2022-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizohabitans arisaemae" ], "sample_taxid": [ "2720610" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.259 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.09, "strain_heterogeneity": 42.86, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8327142", "Number of Sequences": "59", "Longest Sequences (bp)": "1782256", "N50 (bp)": "1334691", "Gap Ratio (%)": "0.002654", "GCcontent (%)": "69.7", "Number of CDSs": "7377", "Average Protein Length": "328.4", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "71", "Number of CRISPRs": "11" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptosporangium roseum", "strain": "strain=DSM 43021", "accession": "GCA_000024865.1", "taxid": 2001, "species_taxid": 2001, 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"organism_name": "Nonomuraea africana", "strain": "strain=DSM 43748", "accession": "GCA_014873535.1", "taxid": 46171, "species_taxid": 46171, "relation_to_type": "type", "validated": true, "ani": 78.1809, "matched_fragments": 908, "total_fragments": 2761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 78.1332, "matched_fragments": 903, "total_fragments": 2761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea ceibae", "strain": "strain=KCTC 39826", "accession": "GCA_019396325.1", "taxid": 1935170, "species_taxid": 1935170, "relation_to_type": "type", "validated": true, "ani": 78.116, "matched_fragments": 968, "total_fragments": 2761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": 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