{ "type": "genome", "identifier": "GCF_025998535.1", "organism": "Desulfolithobacter dissulfuricans", "title": "Desulfolithobacter dissulfuricans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyoto University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025998535.1", "bioproject": "PRJNA224116", "biosample": "SAMD00262140", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2795293", "species_taxid": "2795293", "organism_name": "Desulfolithobacter dissulfuricans", "infraspecific_name": "strain=GF1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/16", "asm_name": "ASM2599853v1", "asm_submitter": "Kyoto University", "gbrs_paired_asm": "GCA_025998535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/998/535/GCF_025998535.1_ASM2599853v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3596428", "genome_size_ungapped": "3596428", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025998535.1-RS_2024_07_03", "annotation_date": "2024-07-03", "total_gene_count": "3226", "protein_coding_gene_count": "3076", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-16", "dateModified": "2022-09-16", "datePublished": "2022-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfolithobacter dissulfuricans" ], "sample_taxid": [ "2795293" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Izu-Bonin Arc, Suiyo Seamount" ], "sample_host_location_id": [], "data_size": "1.006 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3596428", "Number of Sequences": "1", "Longest Sequences (bp)": "3596428", "N50 (bp)": "3596428", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "3242", "Average Protein Length": "318.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfobulbus elongatus", "strain": "strain=DSM 2908", "accession": "GCA_000621145.1", "taxid": 53332, "species_taxid": 53332, "relation_to_type": "type", "validated": true, "ani": 77.827, "matched_fragments": 202, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus propionicus", "strain": "strain=DSM 2032", "accession": "GCA_000186885.1", "taxid": 894, "species_taxid": 894, "relation_to_type": "type", "validated": true, "ani": 77.3153, "matched_fragments": 191, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum mediterraneum", "strain": "strain=DSM 13871", "accession": "GCA_000429965.1", "taxid": 160661, "species_taxid": 160661, "relation_to_type": "type", "validated": true, "ani": 77.2481, "matched_fragments": 244, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus oralis", "strain": "strain=HOT041/ORNL", "accession": "GCA_002952055.1", "taxid": 1986146, "species_taxid": 1986146, "relation_to_type": "type", "validated": true, "ani": 76.8696, "matched_fragments": 73, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus rhabdoformis", "strain": "strain=DSM 8777", "accession": "GCA_016919065.1", "taxid": 34032, "species_taxid": 34032, "relation_to_type": "type", "validated": true, "ani": 76.6172, "matched_fragments": 87, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_016918515.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 76.3193, "matched_fragments": 89, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_014201505.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 76.279, "matched_fragments": 91, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 75.4827, "matched_fragments": 52, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015484845.1", "gtdb_species": "s__DRKI01 sp015484845", "ani": 79.15, "matched_fragments": 396, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__DRKI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011051875.1", "gtdb_species": "s__DRKI01 sp011051875", "ani": 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