{ "type": "genome", "identifier": "GCF_026005215.1", "organism": "Capnocytophaga catalasegens", "title": "Capnocytophaga catalasegens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026005215.1", "bioproject": "PRJNA224116", "biosample": "SAMD00326076", "wgs_master": "BPMA00000000.1", "refseq_category": "reference genome", "taxid": "1004260", "species_taxid": "1004260", "organism_name": "Capnocytophaga catalasegens", "infraspecific_name": "strain=KC07084", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/17", "asm_name": "ASM2600521v1", "asm_submitter": "National Institute of Infectious Diseases", "gbrs_paired_asm": "GCA_026005215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/005/215/GCF_026005215.1_ASM2600521v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2917451", "genome_size_ungapped": "2916074", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026005215.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "2817", "protein_coding_gene_count": "2707", "non_coding_gene_count": "48", "pubmed_id": "36951910" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-17", "dateModified": "2022-08-17", "datePublished": "2022-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Capnocytophaga catalasegens" ], "sample_taxid": [ "1004260" ], "sample_host_organism": [ "Felis catus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Kanagawa" ], "sample_host_location_id": [], "data_size": "0.815 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2917451", "Number of Sequences": "100", "Longest Sequences (bp)": "240225", "N50 (bp)": "75510", "Gap Ratio (%)": "0.047199", "GCcontent (%)": "33.7", "Number of CDSs": "2664", "Average Protein Length": "313.3", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capnocytophaga canimorsus", "strain": "strain=DSM 19204", "accession": "GCA_002797785.1", "taxid": 28188, "species_taxid": 28188, "relation_to_type": "type", "validated": true, "ani": 80.6405, "matched_fragments": 147, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga canimorsus", "strain": "strain=7120", "accession": "GCA_002302565.1", "taxid": 28188, "species_taxid": 28188, "relation_to_type": "type", "validated": true, "ani": 80.6296, "matched_fragments": 145, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga canimorsus", "strain": "strain=NCTC12242", "accession": "GCA_900460905.1", "taxid": 28188, "species_taxid": 28188, "relation_to_type": "type", "validated": true, "ani": 80.629, "matched_fragments": 145, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga canis", "strain": "strain=CcD38", "accession": "GCA_000827555.1", "taxid": 1848903, "species_taxid": 1848903, "relation_to_type": "type", "validated": true, "ani": 79.8157, "matched_fragments": 133, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga sputigena", "strain": "strain=NCTC11653", "accession": "GCA_900446695.1", "taxid": 1019, "species_taxid": 1019, "relation_to_type": "type", "validated": true, "ani": 78.8117, "matched_fragments": 78, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga felis", "strain": "strain=KC07070", "accession": "GCA_009684755.1", "taxid": 2267611, "species_taxid": 2267611, "relation_to_type": "type", "validated": true, "ani": 77.9918, "matched_fragments": 163, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 76.0578, "matched_fragments": 55, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jejuense", "strain": "strain=EC11", "accession": "GCA_006491595.2", "taxid": 1544455, "species_taxid": 1544455, "relation_to_type": "type", "validated": true, "ani": 75.5487, "matched_fragments": 52, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002302565.1", "gtdb_species": "s__Capnocytophaga canimorsus", "ani": 80.6296, "matched_fragments": 145, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000827555.1", "gtdb_species": "s__Capnocytophaga canis", "ani": 79.8344, "matched_fragments": 132, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_900446695.1", "gtdb_species": "s__Capnocytophaga sputigena", "ani": 78.8117, "matched_fragments": 78, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002302635.1", "gtdb_species": "s__Capnocytophaga stomatis", "ani": 78.7444, "matched_fragments": 161, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.65", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009684755.1", "gtdb_species": "s__Capnocytophaga felis", "ani": 77.9918, "matched_fragments": 163, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000174755.1", "gtdb_species": "s__Capnocytophaga gingivalis", "ani": 77.7366, "matched_fragments": 58, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006491595.2", "gtdb_species": "s__Flavobacterium jejuense", "ani": 75.5674, "matched_fragments": 51, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.388, "cell_length": 0.5, "doubling_h": null, "growth_tmp": 36.625, "optimum_tmp": 36.727, "optimum_ph": 6.75, "genome_size": 2704681.185, "gc_content": 38.962, "coding_genes": 2322.458, "rRNA16S_genes": 3.5, "tRNA_genes": 47.016, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.333, "aerobic_respiration": 0.666, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Capnocytophaga", "catalasegens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }