{ "type": "genome", "identifier": "GCF_026012615.1", "organism": "Mycobacterium montefiorense", "title": "Mycobacterium montefiorense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026012615.1", "bioproject": "PRJNA224116", "biosample": "SAMD00467631", "wgs_master": "BSAJ00000000.1", "refseq_category": "na", "taxid": "154654", "species_taxid": "154654", "organism_name": "Mycobacterium montefiorense", "infraspecific_name": "strain=ATCC BAA-256", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2601261v1", "asm_submitter": "Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University", "gbrs_paired_asm": "GCA_026012615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/012/615/GCF_026012615.1_ASM2601261v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5226877", "genome_size_ungapped": "5027968", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "735", "contig_count": "735", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026012615.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5782", "protein_coding_gene_count": "4930", "non_coding_gene_count": "49", "pubmed_id": "36314924" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium montefiorense" ], "sample_taxid": [ "154654" ], "sample_host_organism": [ "Gymnothorax funebris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.91, "contamination": 7.29, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5226877", "Number of Sequences": "735", "Longest Sequences (bp)": "72984", "N50 (bp)": "16108", "Gap Ratio (%)": "3.809923", "GCcontent (%)": "65.2", "Number of CDSs": "4149", "Average Protein Length": "293.4", "Coding Ratio (%)": "69.9", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium florentinum", "strain": "strain=JCM 14740", 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"matched_fragments": 1058, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium nebraskense", "strain": "strain=DSM 44803", "accession": "GCA_002102255.1", "taxid": 244292, "species_taxid": 244292, "relation_to_type": "type", "validated": true, "ani": 81.8836, "matched_fragments": 962, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 81.878, "matched_fragments": 974, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.91, "contamination": 7.29, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCF_003112775.1", "gtdb_species": "s__Mycobacterium montefiorense", "ani": 97.5822, "matched_fragments": 1402, "total_fragments": 1447, 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