{ "type": "genome", "identifier": "GCF_026013475.1", "organism": "Micromonospora yasonensis", "title": "Micromonospora yasonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalonkorn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026013475.1", "bioproject": "PRJNA224116", "biosample": "SAMN31474608", "wgs_master": "JAPDPH000000000.1", "refseq_category": "reference genome", "taxid": "1128667", "species_taxid": "1128667", "organism_name": "Micromonospora yasonensis", "infraspecific_name": "strain=DSM 45980", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/05", "asm_name": "ASM2601347v1", "asm_submitter": "Chulalonkorn University", "gbrs_paired_asm": "GCA_026013475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/013/475/GCF_026013475.1_ASM2601347v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7712081", "genome_size_ungapped": "7712081", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "521", "contig_count": "521", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026013475.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "7369", "protein_coding_gene_count": "7015", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-05", "dateModified": "2022-11-05", "datePublished": "2022-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora yasonensis" ], "sample_taxid": [ "1128667" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Black sea" ], "sample_host_location_id": [], "data_size": "2.067 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7712081", "Number of Sequences": "521", "Longest Sequences (bp)": "104985", "N50 (bp)": "27745", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "6717", "Average Protein Length": "314.4", "Coding Ratio (%)": "82.2", "Number of rRNAs": "2", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 88.8551, "matched_fragments": 1563, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora narathiwatensis", "strain": "strain=DSM 45248", "accession": "GCA_900089605.1", "taxid": 299146, "species_taxid": 299146, "relation_to_type": "type", "validated": true, "ani": 88.7761, "matched_fragments": 1509, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora auratinigra", "strain": "strain=DSM 44815", "accession": "GCA_900089595.1", "taxid": 261654, "species_taxid": 261654, "relation_to_type": "type", "validated": true, "ani": 88.642, "matched_fragments": 1478, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, "ani": 88.6103, "matched_fragments": 1538, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora viridifaciens", "strain": "strain=DSM 43909", "accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 88.5076, "matched_fragments": 1545, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 88.4397, "matched_fragments": 1523, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=DSM 101760", "accession": "GCA_009671205.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 88.4206, "matched_fragments": 1531, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=TMS7", "accession": "GCA_010671825.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 88.3985, "matched_fragments": 1535, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 88.3506, "matched_fragments": 1476, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 87.8981, "matched_fragments": 1469, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 87.3028, "matched_fragments": 1447, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora globispora", "strain": "strain=S2901", "accession": "GCA_003857015.1", "taxid": 1450148, "species_taxid": 1450148, "relation_to_type": "type", "validated": true, "ani": 87.2637, "matched_fragments": 1186, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 86.8459, "matched_fragments": 1414, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.4466, "matched_fragments": 1097, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.7048, "matched_fragments": 1233, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.5734, "matched_fragments": 1311, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.4421, "matched_fragments": 1196, "total_fragments": 2331, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003725545.1", "gtdb_species": "s__Micromonospora sp003725545", "ani": 91.0658, "matched_fragments": 1369, "total_fragments": 2331, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_008119785.1", "gtdb_species": "s__Micromonospora sp008119785", "ani": 89.1143, "matched_fragments": 1749, "total_fragments": 2331, 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