{ "type": "genome", "identifier": "GCF_026013525.1", "organism": "Sphingomonas canadensis", "title": "Sphingomonas canadensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangxi Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026013525.1", "bioproject": "PRJNA224116", "biosample": "SAMN31528367", "wgs_master": "JAPDRA000000000.1", "refseq_category": "reference genome", "taxid": "1219257", "species_taxid": "1219257", "organism_name": "Sphingomonas canadensis", "infraspecific_name": "strain=FWC47", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/05", "asm_name": "ASM2601352v1", "asm_submitter": "Jiangxi Normal University", "gbrs_paired_asm": "GCA_026013525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/013/525/GCF_026013525.1_ASM2601352v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4203662", "genome_size_ungapped": "4203295", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026013525.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4159", "protein_coding_gene_count": "4062", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-05", "dateModified": "2022-11-05", "datePublished": "2022-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas canadensis" ], "sample_taxid": [ "1219257" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, "species_taxid": 1609977, "relation_to_type": "type", "validated": true, "ani": 80.7665, "matched_fragments": 717, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pituitosa", "strain": "strain=NBRC 102491", "accession": "GCA_001598435.1", "taxid": 99597, "species_taxid": 99597, "relation_to_type": "type", "validated": true, "ani": 80.7385, "matched_fragments": 636, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pokkalii", "strain": "strain=L3B27", "accession": "GCA_003096275.1", "taxid": 2175090, "species_taxid": 2175090, "relation_to_type": "type", "validated": true, "ani": 80.6569, "matched_fragments": 580, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 80.6385, "matched_fragments": 635, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas trueperi", "strain": "strain=DSM 7225", "accession": "GCA_011927635.1", "taxid": 53317, "species_taxid": 53317, "relation_to_type": "type", "validated": true, "ani": 80.6369, "matched_fragments": 642, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=JSS26", "accession": "GCA_002797435.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 80.2487, "matched_fragments": 597, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=NBRC 16723", "accession": "GCA_001598395.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 80.1648, "matched_fragments": 606, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 79.9595, "matched_fragments": 649, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gei", "strain": "strain=ZFGT-11", "accession": "GCA_004792685.1", "taxid": 1395960, "species_taxid": 1395960, "relation_to_type": "type", "validated": true, "ani": 79.922, "matched_fragments": 627, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 79.6701, "matched_fragments": 608, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidimutans", "strain": "strain=KACC 14949", "accession": "GCA_002374835.1", "taxid": 862134, "species_taxid": 862134, "relation_to_type": "type", "validated": true, "ani": 79.6458, "matched_fragments": 559, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas corticis", "strain": "strain=36D10-4-7", "accession": "GCA_012035195.1", "taxid": 2722791, "species_taxid": 2722791, "relation_to_type": "type", "validated": true, "ani": 79.5438, "matched_fragments": 553, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter portus", "strain": "strain=FM6", "accession": "GCA_003171655.1", "taxid": 2676234, "species_taxid": 2676234, "relation_to_type": "type", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017744835.1", "gtdb_species": "s__Sphingomonas sp017744835", "ani": 81.3991, "matched_fragments": 667, "total_fragments": 1387, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196745.1", "gtdb_species": "s__Sphingomonas kyeonggiensis", "ani": 80.9569, "matched_fragments": 718, "total_fragments": 1387, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, 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