{ "type": "genome", "identifier": "GCF_026013645.1", "organism": "Virgibacillus natechei", "title": "Virgibacillus natechei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "World Institute of Kimchi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026013645.1", "bioproject": "PRJNA224116", "biosample": "SAMN31452450", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1216297", "species_taxid": "1216297", "organism_name": "Virgibacillus natechei", "infraspecific_name": "strain=DSM 25609", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/06", "asm_name": "ASM2601364v1", "asm_submitter": "World Institute of Kimchi", "gbrs_paired_asm": "GCA_026013645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/013/645/GCF_026013645.1_ASM2601364v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3867590", "genome_size_ungapped": "3867590", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026013645.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3880", "protein_coding_gene_count": "3707", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-06", "dateModified": "2022-11-06", "datePublished": "2022-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Virgibacillus natechei" ], "sample_taxid": [ "1216297" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.091 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3867590", "Number of Sequences": "1", "Longest Sequences (bp)": "3867590", "N50 (bp)": "3867590", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "3835", "Average Protein Length": "273.5", "Coding Ratio (%)": "81.4", "Number of rRNAs": "18", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Virgibacillus natechei", "strain": "strain=DSM 25609", "accession": "GCA_017874115.1", "taxid": 1216297, "species_taxid": 1216297, "relation_to_type": "type", "validated": true, "ani": 99.978, "matched_fragments": 1246, "total_fragments": 1289, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 78.5648, "matched_fragments": 61, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus zengyii", "strain": "strain=X-1125", "accession": "GCA_003268595.1", "taxid": 2213194, "species_taxid": 2213194, "relation_to_type": "type", "validated": true, "ani": 78.3323, "matched_fragments": 81, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus pantothenticus", "strain": "strain=DSM 26", "accession": "GCA_018075365.1", "taxid": 1473, "species_taxid": 1473, "relation_to_type": "type", "validated": true, "ani": 77.9846, "matched_fragments": 126, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus 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"accession": "GCA_003369575.1", "taxid": 1229153, "species_taxid": 1229153, "relation_to_type": "type", "validated": true, "ani": 77.2591, "matched_fragments": 154, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus jordanicus", "strain": "strain=GSFE11", "accession": "GCA_022095695.1", "taxid": 2867266, "species_taxid": 2867266, "relation_to_type": "type", "validated": true, "ani": 77.1735, "matched_fragments": 142, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus chiguensis", "strain": "strain=CGMCC 1.6496", "accession": "GCA_900129865.1", "taxid": 411959, "species_taxid": 411959, "relation_to_type": "type", "validated": true, "ani": 77.1249, "matched_fragments": 106, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus pantothenticus", "strain": "strain=DSM 26", "accession": "GCA_001189575.1", "taxid": 1473, "species_taxid": 1473, "relation_to_type": "type", "validated": true, "ani": 77.1142, "matched_fragments": 119, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus pantothenticus", "strain": "strain=DSM 26", "accession": "GCA_900156795.1", "taxid": 1473, "species_taxid": 1473, "relation_to_type": "type", "validated": true, "ani": 77.0666, "matched_fragments": 118, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus bengalensis", "strain": "strain=MCCC 1K00260", "accession": "GCA_003628445.1", "taxid": 1435466, "species_taxid": 1435466, "relation_to_type": "type", "validated": true, "ani": 77.0453, "matched_fragments": 139, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus chungangensis", "strain": "strain=CAU 1051", "accession": "GCA_003369565.1", "taxid": 1229152, "species_taxid": 1229152, "relation_to_type": "type", "validated": true, "ani": 76.9207, "matched_fragments": 169, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus salinisoli", "strain": "strain=YIM B00359", "accession": "GCA_009733865.1", "taxid": 2678611, "species_taxid": 2678611, "relation_to_type": "type", "validated": true, "ani": 76.7963, "matched_fragments": 176, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus ryukyuensis", "strain": "strain=DSM 15140", "accession": "GCA_003315295.1", "taxid": 200904, "species_taxid": 200904, "relation_to_type": "type", "validated": true, "ani": 76.7779, "matched_fragments": 52, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus scapharcae", "strain": "strain=TW25", "accession": "GCA_000190475.2", "taxid": 1147159, "species_taxid": 1147159, "relation_to_type": "type", "validated": true, "ani": 76.5881, "matched_fragments": 98, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus quisquiliarum", "strain": "strain=DSM 15825", "accession": "GCA_014202495.1", "taxid": 227865, "species_taxid": 227865, "relation_to_type": "type", "validated": true, "ani": 76.3525, "matched_fragments": 57, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus quisquiliarum", "strain": "strain=NBRC 102429", "accession": "GCA_007991195.1", "taxid": 227865, "species_taxid": 227865, "relation_to_type": "type", "validated": true, "ani": 76.2344, "matched_fragments": 57, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017874115.1", "gtdb_species": "s__Virgibacillus_H natechei", "ani": 99.978, "matched_fragments": 1246, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002287375.1", "gtdb_species": "s__Virgibacillus_G profundi", "ani": 77.8221, "matched_fragments": 301, "total_fragments": 1289, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900176885.1", "gtdb_species": "s__Oceanobacillus senegalensis", "ani": 77.8183, "matched_fragments": 130, "total_fragments": 1289, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002266285.1", "gtdb_species": "s__Virgibacillus_G indicus", "ani": 77.7767, "matched_fragments": 210, "total_fragments": 1289, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000612865.1", "gtdb_species": "s__Virgibacillus picturae", "ani": 77.6402, "matched_fragments": 137, "total_fragments": 1289, "gtdb_taxonomy": 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