{ "type": "genome", "identifier": "GCF_026072635.1", "organism": "Pseudomonas solani", "title": "Pseudomonas solani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agrobiological Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026072635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00224199", "wgs_master": "na", "refseq_category": "na", "taxid": "2731552", "species_taxid": "2731552", "organism_name": "Pseudomonas solani", "infraspecific_name": "strain=Sm006", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2607263v1", "asm_submitter": "National Institute of Agrobiological Sciences", "gbrs_paired_asm": "GCA_026072635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/072/635/GCF_026072635.1_ASM2607263v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6661285", "genome_size_ungapped": "6661285", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026072635.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "6072", "protein_coding_gene_count": "5779", "non_coding_gene_count": "79", "pubmed_id": "37347683" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas solani" ], "sample_taxid": [ "2731552" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Aichi, Toyoake" ], "sample_host_location_id": [], "data_size": "1.812 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6661285", "Number of Sequences": "1", "Longest Sequences (bp)": "6661285", "N50 (bp)": "6661285", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "6102", "Average Protein Length": "323.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "12", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, "relation_to_type": "type", "validated": true, "ani": 92.8858, "matched_fragments": 1960, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, "species_taxid": 319939, "relation_to_type": "suspected-type", "validated": true, "ani": 87.5826, "matched_fragments": 1625, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_002355475.1", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 84.9891, "matched_fragments": 1276, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_000262065.3", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 84.9786, "matched_fragments": 1257, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 83.8575, "matched_fragments": 1038, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 83.8473, "matched_fragments": 1076, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.6899, "matched_fragments": 1009, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 83.2523, "matched_fragments": 920, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=NBRC 103047", "accession": "GCA_002091655.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 83.2252, "matched_fragments": 1107, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 83.2122, "matched_fragments": 1082, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 83.1927, "matched_fragments": 1115, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 83.1535, "matched_fragments": 1119, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 82.5402, "matched_fragments": 1220, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=NCTC10332", "accession": "GCA_001457615.1", "taxid": 287, 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true, "ani": 81.7094, "matched_fragments": 760, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 81.2577, "matched_fragments": 809, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 80.3787, "matched_fragments": 943, "total_fragments": 2220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 80.3494, "matched_fragments": 911, 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