{
    "type": "genome",
    "identifier": "GCF_026089295.1",
    "organism": "Fusobacterium simiae",
    "title": "Fusobacterium simiae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "institut hospitalo-universitaire IHU",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026089295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN31056805",
        "wgs_master": "JAOXXL000000000.1",
        "refseq_category": "reference genome",
        "taxid": "855",
        "species_taxid": "855",
        "organism_name": "Fusobacterium simiae",
        "infraspecific_name": "strain=DSM 19848",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/08",
        "asm_name": "ASM2608929v1",
        "asm_submitter": "institut hospitalo-universitaire IHU",
        "gbrs_paired_asm": "GCA_026089295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/089/295/GCF_026089295.1_ASM2608929v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2481730",
        "genome_size_ungapped": "2481730",
        "gc_percent": "27.000000",
        "replicon_count": "0",
        "scaffold_count": "86",
        "contig_count": "86",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_026089295.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2348",
        "protein_coding_gene_count": "2244",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-08",
    "dateModified": "2022-11-08",
    "datePublished": "2022-11-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium simiae"
        ],
        "sample_taxid": [
            "855"
        ],
        "sample_host_organism": [
            "monkey"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.670 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2481730",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "168327",
        "N50 (bp)": "53540",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.1",
        "Number of CDSs": "2258",
        "Average Protein Length": "325.8",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
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                "species_taxid": 285729,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
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                "species_taxid": 1583098,
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                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
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                "accession": "GCA_014217355.1",
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                "species_taxid": 1583098,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000493815.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000158275.2",
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                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_008633215.1",
                "gtdb_species": "s__Fusobacterium nucleatum_J",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
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                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_000007325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
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                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_000182945.1",
                "gtdb_species": "s__Fusobacterium vincentii",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
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                "num_clustered_genomes": 18,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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        ]
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    "_bac2feature": {
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        "bacillus_cell_shape": 0.142,
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    "_genome_taxon": [
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        "simiae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}