{ "type": "genome", "identifier": "GCF_026130545.1", "organism": "Lichenifustis flavocetrariae", "title": "Lichenifustis flavocetrariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KOREA POLAR RESEARCH INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026130545.1", "bioproject": "PRJNA224116", "biosample": "SAMN28555850", "wgs_master": "JAMOIM000000000.1", "refseq_category": "reference genome", "taxid": "2949735", "species_taxid": "2949735", "organism_name": "Lichenifustis flavocetrariae", "infraspecific_name": "strain=BP6-180914", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/10", "asm_name": "ASM2613054v1", "asm_submitter": "KOREA POLAR RESEARCH INSTITUTE", "gbrs_paired_asm": "GCA_026130545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/130/545/GCF_026130545.1_ASM2613054v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7523782", "genome_size_ungapped": "7523382", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "181", "contig_count": "181", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026130545.1-RS_2024_05_14", "annotation_date": "2024-05-14", "total_gene_count": "7309", "protein_coding_gene_count": "6940", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-10", "dateModified": "2022-11-10", "datePublished": "2022-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Lichenifustis flavocetrariae" ], "sample_taxid": [ "2949735" ], "sample_host_organism": [ "Flavocetraria nivalis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "2.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7523782", "Number of Sequences": "181", "Longest Sequences (bp)": "726491", "N50 (bp)": "180878", "Gap Ratio (%)": "0.005316", "GCcontent (%)": "63.7", "Number of CDSs": "7231", "Average Protein Length": "295.0", "Coding Ratio (%)": "85.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, 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"below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_002937135.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6596, "matched_fragments": 226, "total_fragments": 2433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_003258765.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6592, "matched_fragments": 222, "total_fragments": 2433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_000178815.2", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 76.6204, "matched_fragments": 234, "total_fragments": 2433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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