{ "type": "genome", "identifier": "GCF_026153295.1", "organism": "Rhodococcus antarcticus", "title": "Rhodococcus antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Center for Type Culture Collection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026153295.1", "bioproject": "PRJNA224116", "biosample": "SAMN31373510", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2987751", "species_taxid": "2987751", "organism_name": "Rhodococcus antarcticus", "infraspecific_name": "strain=75", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/13", "asm_name": "ASM2615329v1", "asm_submitter": "China Center for Type Culture Collection", "gbrs_paired_asm": "GCA_026153295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/153/295/GCF_026153295.1_ASM2615329v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3943709", "genome_size_ungapped": "3943709", "gc_percent": "73.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026153295.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "3847", "protein_coding_gene_count": "3727", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-13", "dateModified": "2022-11-13", "datePublished": "2022-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus antarcticus" ], "sample_taxid": [ "2987751" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.035 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3943709", "Number of Sequences": "4", "Longest Sequences (bp)": "3678202", "N50 (bp)": "3678202", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "3852", "Average Protein Length": "309.8", "Coding Ratio (%)": "90.8", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus tukisamuensis", "strain": "strain=JCM 11308", "accession": "GCA_900101735.1", "taxid": 168276, "species_taxid": 168276, "relation_to_type": "type", "validated": true, "ani": 78.2884, "matched_fragments": 450, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus tukisamuensis", "strain": "strain=NBRC 100609", "accession": "GCA_001894985.1", "taxid": 168276, "species_taxid": 168276, "relation_to_type": "type", "validated": true, "ani": 78.2546, "matched_fragments": 450, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=NBRC 100610", "accession": "GCA_001894865.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 78.1232, "matched_fragments": 408, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=DSM 44675", "accession": "GCA_900109405.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 78.1072, "matched_fragments": 405, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus spelaei", "strain": "strain=C9-5", "accession": "GCA_006704125.1", "taxid": 2546320, "species_taxid": 2546320, "relation_to_type": "type", "validated": true, "ani": 78.0509, "matched_fragments": 424, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus oryzae", "strain": "strain=NEAU-CX67", "accession": "GCA_005049235.1", "taxid": 2571143, "species_taxid": 2571143, "relation_to_type": "type", "validated": true, "ani": 77.9028, "matched_fragments": 421, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 77.9015, "matched_fragments": 389, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 77.8707, "matched_fragments": 380, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=ATCC 51384", "accession": "GCA_025215495.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 77.8294, "matched_fragments": 377, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=DSM 44177", "accession": "GCA_004014795.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 77.752, "matched_fragments": 366, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia caishijiensis", "strain": "strain=DSM 44831", "accession": "GCA_009858255.1", "taxid": 184756, "species_taxid": 184756, "relation_to_type": "type", "validated": true, "ani": 77.6769, "matched_fragments": 350, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia caishijiensis", "strain": "strain=NBRC 108228", "accession": "GCA_001612825.1", "taxid": 184756, "species_taxid": 184756, "relation_to_type": "type", "validated": true, "ani": 77.6322, "matched_fragments": 356, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus hindustanus", "strain": "strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 77.6092, "matched_fragments": 475, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 77.5999, "matched_fragments": 475, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia tengchongensis", "strain": "strain=CFH S0057", "accession": "GCA_018362975.1", "taxid": 2055889, "species_taxid": 2055889, "relation_to_type": "type", "validated": true, "ani": 77.5833, "matched_fragments": 404, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia maris", "strain": "strain=DSM 44693", "accession": "GCA_024171815.1", "taxid": 72806, "species_taxid": 72806, "relation_to_type": "type", "validated": true, "ani": 77.5754, "matched_fragments": 350, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria kofuensis", "strain": "strain=DSM 43851", "accession": "GCA_014203355.1", "taxid": 103725, "species_taxid": 103725, "relation_to_type": "type", "validated": true, "ani": 77.5398, "matched_fragments": 536, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 77.5074, "matched_fragments": 454, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus tenebrarius", "strain": "strain=DSM 40477", "accession": "GCA_024171885.1", "taxid": 1933, "species_taxid": 1933, "relation_to_type": "type", "validated": true, "ani": 77.4929, "matched_fragments": 466, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia cyriacigeorgica", "strain": "strain=DSM 44484", "accession": "GCA_005863225.1", "taxid": 135487, "species_taxid": 135487, "relation_to_type": "type", "validated": true, "ani": 77.4217, "matched_fragments": 368, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix variisporea", "strain": "strain=DSM 43911", "accession": "GCA_003634995.1", "taxid": 543527, "species_taxid": 543527, "relation_to_type": "type", "validated": true, "ani": 77.4165, "matched_fragments": 535, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hirsuta", "strain": "strain=VKM Ac-666", "accession": "GCA_008630535.1", "taxid": 1837, "species_taxid": 1837, "relation_to_type": "type", "validated": true, "ani": 77.2999, "matched_fragments": 520, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia alba", "strain": "strain=DSM 44684", "accession": "GCA_004339125.1", "taxid": 225051, "species_taxid": 225051, "relation_to_type": "type", "validated": true, "ani": 77.2332, "matched_fragments": 371, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis saalfeldensis", "strain": "strain=DSM 44993", "accession": "GCA_900110575.1", "taxid": 394193, "species_taxid": 394193, "relation_to_type": "type", "validated": true, "ani": 77.2301, "matched_fragments": 488, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea albidocapillata", "strain": "strain=NRRL B-24057", "accession": "GCA_000719115.1", "taxid": 40571, "species_taxid": 40571, "relation_to_type": "type", "validated": true, "ani": 77.1502, "matched_fragments": 428, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acaciae", "strain": "strain=DSM 45401", "accession": "GCA_000620785.1", "taxid": 551276, "species_taxid": 551276, "relation_to_type": "type", "validated": true, "ani": 77.1093, "matched_fragments": 574, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomycetospora succinea", "strain": "strain=DSM 45775", "accession": "GCA_004363095.1", "taxid": 663603, "species_taxid": 663603, "relation_to_type": "type", "validated": true, "ani": 77.0728, "matched_fragments": 554, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004006015.1", "gtdb_species": "s__X156 sp004006015", "ani": 80.6685, "matched_fragments": 595, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__X156", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017882745.1", "gtdb_species": "s__X156 sp017882745", "ani": 78.6674, "matched_fragments": 320, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__X156", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001894985.1", "gtdb_species": "s__Rhodococcus tukisamuensis", "ani": 78.2801, "matched_fragments": 447, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001894865.1", "gtdb_species": "s__Rhodococcus maanshanensis", "ani": 78.1053, "matched_fragments": 410, 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