{ "type": "genome", "identifier": "GCF_026157035.1", "organism": "Sphingomicrobium nitratireducens", "title": "Sphingomicrobium nitratireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026157035.1", "bioproject": "PRJNA224116", "biosample": "SAMN29790128", "wgs_master": "JANJZA000000000.1", "refseq_category": "reference genome", "taxid": "2964666", "species_taxid": "2964666", "organism_name": "Sphingomicrobium nitratireducens", "infraspecific_name": "strain=O-35", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/13", "asm_name": "ASM2615703v1", "asm_submitter": "Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_026157035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/157/035/GCF_026157035.1_ASM2615703v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2266505", "genome_size_ungapped": "2266405", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026157035.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2288", "protein_coding_gene_count": "2227", "non_coding_gene_count": "51", "pubmed_id": "36242647" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-13", "dateModified": "2022-11-13", "datePublished": "2022-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomicrobium nitratireducens" ], "sample_taxid": [ "2964666" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi Zhuang Autonomous Region" ], "sample_host_location_id": [], "data_size": "0.618 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2266505", "Number of Sequences": "3", "Longest Sequences (bp)": "2101414", "N50 (bp)": "2101414", "Gap Ratio (%)": "0.004412", "GCcontent (%)": "66.4", "Number of CDSs": "2249", "Average Protein Length": "312.1", "Coding Ratio (%)": "92.9", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomicrobium astaxanthinifaciens", "strain": "strain=JCM 18551", "accession": "GCA_022865105.1", 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"matched_fragments": 278, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 78.0143, "matched_fragments": 274, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jatrophae", "strain": "strain=S5-249", "accession": "GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 77.9044, "matched_fragments": 259, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas deserti", "strain": "strain=GL-C-18", "accession": "GCA_003012735.1", "taxid": 2116704, "species_taxid": 2116704, "relation_to_type": "type", "validated": true, "ani": 77.7894, "matched_fragments": 282, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas soli", "strain": "strain=NBRC 100801", "accession": "GCA_001591025.1", "taxid": 266127, "species_taxid": 266127, "relation_to_type": "type", "validated": true, "ani": 77.6239, "matched_fragments": 235, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingopyxis algicola", "strain": "strain=JCM 31719", "accession": "GCA_013378075.1", "taxid": 2026624, "species_taxid": 2026624, "relation_to_type": "type", "validated": true, "ani": 77.5629, "matched_fragments": 222, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 77.5137, "matched_fragments": 271, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" } ], 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