{ "type": "genome", "identifier": "GCF_026157155.1", "organism": "Sphingomicrobium astaxanthinifaciens", "title": "Sphingomicrobium astaxanthinifaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026157155.1", "bioproject": "PRJNA224116", "biosample": "SAMN30225271", "wgs_master": "JANPVO000000000.1", "refseq_category": "reference genome", "taxid": "1227949", "species_taxid": "1227949", "organism_name": "Sphingomicrobium astaxanthinifaciens", "infraspecific_name": "strain=JCM 18551", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/13", "asm_name": "ASM2615715v1", "asm_submitter": "Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_026157155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/157/155/GCF_026157155.1_ASM2615715v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2249836", "genome_size_ungapped": "2249636", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026157155.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2304", "protein_coding_gene_count": "2231", "non_coding_gene_count": "57", "pubmed_id": "36242647" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-13", "dateModified": "2022-11-13", "datePublished": "2022-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomicrobium astaxanthinifaciens" ], "sample_taxid": [ "1227949" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.604 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2249836", "Number of Sequences": "3", "Longest Sequences (bp)": "1125872", "N50 (bp)": "1125872", "Gap Ratio (%)": "0.008890", "GCcontent (%)": "68.3", "Number of CDSs": "2242", "Average Protein Length": "305.7", "Coding Ratio (%)": "91.4", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomicrobium astaxanthinifaciens", "strain": "strain=JCM 18551", "accession": "GCA_022865105.1", "taxid": 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