# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_26	LOCUS_00260	sequence1:36572..37024(-)	partial			WP_001827266.1	tRNA-dihydrouridine synthase	100.0	48.4	96.0
MGA_53	LOCUS_00530	sequence1:68384..68638(+)	partial			WP_000577184.1	GntR family transcriptional regulator	94.0	34.9	40.7
MGA_54	LOCUS_00540	sequence1:68666..69781(+)	internal_stop_codon	68636..68638(+)		WP_003244019.1	PLP-dependent aminotransferase family protein	100.0	77.0	37.2
MGA_73	LOCUS_00730	sequence1:91102..91443(+)	partial			WP_000414629.1	MFS transporter	100.0	54.3	98.2
MGA_94	LOCUS_00940	sequence1:112715..112909(+)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	98.4
MGA_95	LOCUS_00950	sequence1:113282..113767(+)	frameshift		113695	WP_011117535.1	replication initiation factor domain-containing protein	89.4	49.0	73.3
MGA_96	LOCUS_00960	sequence1:113752..114042(+)	frameshift		113695	WP_011117535.1	replication initiation factor domain-containing protein	99.0	31.0	63.2
MGA_98	LOCUS_00980	sequence1:115066..115287(+)	frameshift,internal_stop_codon	114851..114853(+)	115057	WP_000093392.1	IS200/IS605 family transposase	87.7	39.8	98.4
MGA_149	LOCUS_01490	sequence1:181669..182628(+)	partial			WP_001796914.1	ABC transporter permease	100.0	64.8	91.5
MGA_216	LOCUS_02160	sequence1:263754..263981(+)	partial			WP_126475239.1	IS1182 family transposase	85.3	11.7	98.4
MGA_244	LOCUS_02440	sequence1:292270..292422(+)	frameshift		292413	WP_000141941.1	TIGR01741 family protein	96.0	28.9	87.5
MGA_245	LOCUS_02450	sequence1:292466..292765(+)	frameshift		292413	WP_000141941.1	TIGR01741 family protein	100.0	59.6	81.8
MGA_323	LOCUS_03230	sequence1:366705..367016(-)	frameshift		367008,367281,366912,367113	WP_047210621.1	site-specific integrase	75.7	19.2	66.7
MGA_324	LOCUS_03240	sequence1:367094..367252(-)	frameshift		367280,366920,367115,367373,367007	WP_047210621.1	site-specific integrase	88.5	11.3	84.8
MGA_357	LOCUS_03570	sequence1:397839..398534(+)	partial			WP_000705657.1	superantigen-like protein SSL4	92.2	72.6	42.3
MGA_369	LOCUS_03690	sequence1:410837..411310(+)	frameshift		411584,411301	WP_001557596.1	tandem-type lipoprotein	88.5	51.9	83.5
MGA_370	LOCUS_03700	sequence1:411426..411644(+)	frameshift		411584,411301	WP_001557596.1	tandem-type lipoprotein	98.6	26.2	78.9
MGA_498	LOCUS_04920	sequence1:562963..565950(+)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	72.1	75.2	94.7
MGA_529	LOCUS_05230	sequence1:601825..602166(+)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_543	LOCUS_05370	sequence1:613556..613801(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	66.7	11.6	57.4
MGA_634	LOCUS_06280	sequence1:704600..704884(-)	partial			WP_001801730.1	hypothetical protein	90.4	73.9	100.0
MGA_698	LOCUS_06920	sequence1:774691..775023(+)	internal_stop_codon	775021..775023(+)		WP_000538141.1	HD domain-containing protein	100.0	50.9	97.3
MGA_699	LOCUS_06930	sequence1:775111..775341(+)	internal_stop_codon	775021..775023(+)		WP_000538141.1	HD domain-containing protein	100.0	35.2	98.7
MGA_731	LOCUS_07250	sequence1:810991..813720(+)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	61.5	56.5	82.6
MGA_732	LOCUS_07260	sequence1:813941..814060(+)	frameshift		814054	WP_000791702.1	von Willebrand factor binding protein Vwb	94.9	7.4	97.3
MGA_774	LOCUS_07680	sequence1:845643..846410(+)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	73.3	72.2	88.2
MGA_787	LOCUS_07810	sequence1:850986..851756(+)	partial			WP_000190248.1	DnaD domain protein	38.3	39.1	43.9
MGA_817	LOCUS_08110	sequence1:865082..865201(+)	internal_stop_codon	865199..865201(+)		WP_000188649.1	hypothetical protein	100.0	30.7	100.0
MGA_818	LOCUS_08120	sequence1:865202..865465(+)	internal_stop_codon	865199..865201(+)		WP_000188649.1	hypothetical protein	100.0	68.5	100.0
MGA_876	LOCUS_08700	sequence1:919847..920551(+)	internal_stop_codon	920549..920551(+)		WP_000167314.1	ornithine--oxo-acid transaminase	100.0	59.1	100.0
MGA_877	LOCUS_08710	sequence1:920861..921037(+)	partial			WP_000167314.1	ornithine--oxo-acid transaminase	100.0	14.6	98.3
MGA_955	LOCUS_09490	sequence1:1012948..1013163(-)	partial			WP_001788574.1	NINE protein	100.0	74.0	97.2
MGA_993	LOCUS_09870	sequence1:1056322..1056456(-)	partial			WP_000064214.1	glycopeptide resistance-associated protein GraF	54.5	54.5	100.0
MGA_1070	LOCUS_10640	sequence1:1134434..1134760(+)	internal_stop_codon	1134758..1134760(+)		WP_000584398.1	hypothetical protein	91.7	58.9	87.9
MGA_1109	LOCUS_11030	sequence1:1173206..1173400(-)	partial			WP_126475239.1	IS1182 family transposase	81.2	9.5	98.1
MGA_1128	LOCUS_11220	sequence1:1195312..1195515(-)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	100.0
MGA_1156	LOCUS_11500	sequence1:1224310..1225668(-)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	52.1	93.4
MGA_1228	LOCUS_12220	sequence1:1310891..1311475(+)	partial			WP_002485350.1	minor capsid protein	68.6	35.5	56.0
MGA_1232	LOCUS_12260	sequence1:1312949..1313239(+)	internal_stop_codon	1312937..1312939(+),1312856..1312858(+)		WP_002485350.1	minor capsid protein	94.8	22.8	45.1
MGA_1234	LOCUS_12280	sequence1:1313494..1313835(+)	partial			WP_002485350.1	minor capsid protein	100.0	25.2	71.7
MGA_1308	LOCUS_13020	sequence1:1395059..1395355(+)	partial			WP_126475239.1	IS1182 family transposase	99.0	17.8	94.8
MGA_1324	LOCUS_13180	sequence1:1410977..1411171(-)	frameshift		1411215	WP_126475239.1	IS1182 family transposase	100.0	11.7	98.4
MGA_1325	LOCUS_13190	sequence1:1411189..1411581(-)	frameshift		1411215	WP_126475239.1	IS1182 family transposase	67.7	16.1	87.5
MGA_1406	LOCUS_14000	sequence1:1525502..1525708(-)	partial			WP_001033761.1	hypothetical protein	92.6	8.8	63.5
MGA_1495	LOCUS_14890	sequence1:1607132..1607308(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_1542	LOCUS_15360	sequence1:1654976..1655122(-)	partial			WP_000009238.1	SAS049 family protein	72.9	72.9	100.0
MGA_1605	LOCUS_15990	sequence1:1724986..1725792(-)	frameshift,internal_stop_codon	1725834..1725836(-)	1725836	WP_126475239.1	IS1182 family transposase	100.0	49.2	96.6
MGA_1606	LOCUS_16000	sequence1:1725810..1726637(-)	frameshift,internal_stop_codon	1725834..1725836(-)	1725836	WP_126475239.1	IS1182 family transposase	95.3	48.1	94.3
MGA_1638	LOCUS_16320	sequence1:1765539..1766294(+)	frameshift		1766132	WP_000184370.1	transglycosylase domain-containing protein	78.9	65.8	94.9
MGA_1639	LOCUS_16330	sequence1:1766243..1766443(+)	frameshift		1766132	WP_000184370.1	transglycosylase domain-containing protein	100.0	21.9	98.5
MGA_1647	LOCUS_16410	sequence1:1778893..1779933(-)	partial			WP_000193903.1	hypothetical protein	84.1	62.4	73.2
MGA_1672	LOCUS_16660	sequence1:1814157..1814381(-)	frameshift		1814209,1814404	WP_126475239.1	IS1182 family transposase	78.4	12.3	82.1
MGA_1673	LOCUS_16670	sequence1:1814378..1814869(-)	frameshift		1814208,1814817,1814403	WP_126475239.1	IS1182 family transposase	84.7	25.3	93.5
MGA_1694	LOCUS_16880	sequence1:1832753..1833577(+)	frameshift		1833574	WP_126475239.1	IS1182 family transposase	100.0	50.3	96.0
MGA_1695	LOCUS_16890	sequence1:1833610..1834218(+)	frameshift		1833574	WP_126475239.1	IS1182 family transposase	100.0	37.1	97.0
MGA_1717	LOCUS_17110	sequence1:1851252..1851395(-)	frameshift,internal_stop_codon	1851252..1851254(-)	1851242	WP_000159787.1	transposase	89.4	46.7	76.2
MGA_1718	LOCUS_17120	sequence1:1852265..1852642(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	74.4	66.9	44.1
MGA_1719	LOCUS_17130	sequence1:1853162..1857274(-)	partial			WP_011391500.1	hypothetical protein	48.8	43.2	26.4
MGA_1732	LOCUS_17260	sequence1:1870322..1871695(-)	partial			WP_000699969.1	S8 family serine peptidase	69.1	55.1	38.9
MGA_1733	LOCUS_17270	sequence1:1871705..1872223(-)	partial			WP_010880496.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	77.9	35.3	38.0
MGA_1734	LOCUS_17280	sequence1:1872239..1873483(-)	partial			WP_011026975.1	lanthionine synthetase C family protein	75.1	69.1	24.1
MGA_1772	LOCUS_17650	sequence1:1916216..1917319(+)	frameshift,internal_stop_codon	1917318..1917320(+)	1916204	WP_001557163.1	ISL3-like element IS1181 family transposase	100.0	83.6	97.3
MGA_1868	LOCUS_18580	sequence1:2018702..2019049(+)	frameshift		2018640,2018917	WP_000179343.1	tyrosine-type recombinase/integrase	100.0	29.7	54.2
MGA_1872	LOCUS_18620	sequence1:2022190..2023449(-)	partial			WP_000120296.1	SdrH family protein	53.9	54.5	95.1
MGA_1951	LOCUS_19390	sequence1:2108485..2108838(-)	partial			WP_001801792.1	ATP synthase subunit I	83.8	65.3	98.0
MGA_1989	LOCUS_19770	sequence1:2147193..2147396(-)	frameshift,internal_stop_codon	2147193..2147195(-)	2147373	WP_010925589.1	recombinase family protein	86.6	53.6	73.3
MGA_2022	LOCUS_20080	sequence1:2199074..2199874(+)	frameshift		2199742	WP_126475239.1	IS1182 family transposase	95.1	47.7	80.0
MGA_2023	LOCUS_20090	sequence1:2199892..2200191(+)	frameshift,internal_stop_codon	2200190..2200192(+)	2199742	WP_126475239.1	IS1182 family transposase	100.0	18.2	100.0
MGA_2024	LOCUS_20100	sequence1:2200354..2200698(+)	internal_stop_codon	2200189..2200191(+)		WP_126475239.1	IS1182 family transposase	99.1	20.7	99.1
MGA_2053	LOCUS_20390	sequence1:2230090..2231226(-)	partial			WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	88.6	46.2	23.4
MGA_2055	LOCUS_20410	sequence1:2232031..2232324(-)	frameshift		2232323	WP_010939452.1	DEAD/DEAH box helicase family protein	96.9	6.1	47.4
MGA_2056	LOCUS_20420	sequence1:2232321..2233418(-)	frameshift		2233521,2232323,2233647	WP_011202675.1	DEAD/DEAH box helicase family protein	100.0	24.7	33.1
MGA_2152	LOCUS_21370	sequence1:2313227..2313541(+)	frameshift		2313424	WP_126475239.1	IS1182 family transposase	81.7	14.7	72.9
MGA_2199	LOCUS_21840	sequence1:2360146..2360502(+)	partial			WP_126475239.1	IS1182 family transposase	87.3	18.9	94.2
MGA_2228	LOCUS_22130	sequence1:2391516..2392154(+)	internal_stop_codon	2392152..2392154(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	69.7	99.1
MGA_2229	LOCUS_22140	sequence1:2392224..2392430(+)	internal_stop_codon	2392152..2392154(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	22.4	100.0
MGA_2326	LOCUS_23110	sequence1:2493140..2493421(-)	frameshift		2493435	WP_001044255.1	membrane protein	100.0	21.1	96.8
MGA_2327	LOCUS_23120	sequence1:2493352..2494464(-)	frameshift		2493432	WP_001044255.1	membrane protein	93.0	78.0	87.5
MGA_2335	LOCUS_23200	sequence1:2502727..2502897(-)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	92.9
MGA_2343	LOCUS_23280	sequence1:2518312..2518461(-)	partial			WP_001834510.1	hypothetical protein	100.0	49.0	100.0
MGA_2354	LOCUS_23390	sequence1:2530928..2531392(-)	partial			WP_011948695.1	MarR family transcriptional regulator	85.1	73.0	38.2
MGA_2417	LOCUS_24020	sequence1:2598148..2598468(+)	partial			WP_001795157.1	hypothetical protein	100.0	63.9	99.1
MGA_2457	LOCUS_24420	sequence1:2636133..2636819(-)	partial			WP_003894962.1	MBL fold metallo-hydrolase	61.4	67.3	30.8
MGA_2474	LOCUS_24590	sequence1:2656712..2659345(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	62.9	62.9	97.6
MGA_2498	LOCUS_24830	sequence1:2693673..2694044(-)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	55.3	3.0	92.6
MGA_2499	LOCUS_24840	sequence1:2694025..2694789(+)	internal_stop_codon	2693929..2693931(+),2693935..2693937(+),2694787..2694789(+),2693872..2693874(+)		WP_002485492.1	hypothetical protein	63.0	29.8	34.1
MGA_2500	LOCUS_24850	sequence1:2694913..2696121(+)	internal_stop_codon	2696197..2696199(+),2694787..2694789(+),2696299..2696301(+),2696119..2696121(+)		WP_002485492.1	hypothetical protein	99.0	73.8	38.0
MGA_2501	LOCUS_24860	sequence1:2696401..2697201(+)	internal_stop_codon	2697289..2697291(+),2696197..2696199(+),2697373..2697375(+),2697199..2697201(+),2696119..2696121(+),2696389..2696391(+),2696299..2696301(+)		WP_002485492.1	hypothetical protein	99.2	50.8	40.7
MGA_2502	LOCUS_24870	sequence1:2697379..2697657(+)	internal_stop_codon	2697289..2697291(+),2697655..2697657(+),2697373..2697375(+),2697199..2697201(+)		WP_002485492.1	hypothetical protein	95.7	19.6	41.7
MGA_2503	LOCUS_24880	sequence1:2697667..2698191(+)	internal_stop_codon	2698189..2698191(+),2697655..2697657(+)		WP_002485492.1	hypothetical protein	98.3	42.4	39.6
MGA_2521	LOCUS_25060	sequence1:2715543..2715755(-)	partial			WP_000837587.1	hypothetical protein	64.3	76.3	95.6
MGA_2522	LOCUS_25070	sequence1:2715915..2716547(-)	frameshift		2716561	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	100.0
MGA_2523	LOCUS_25080	sequence1:2716544..2717302(-)	frameshift		2716558	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	98.4	53.7	100.0
MGA_2553	LOCUS_25380	sequence1:2744781..2745191(+)	frameshift		2745161	WP_002305939.1	IS30 family transposase	97.1	41.4	67.4
MGA_2555	LOCUS_25400	sequence1:2745827..2746177(+)	partial			WP_002305939.1	IS30 family transposase	89.7	32.6	70.2
MGA_2567	LOCUS_25520	sequence1:2754753..2754890(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
