{ "type": "genome", "identifier": "GCF_026168515.1", "organism": "Brevibacterium spongiae", "title": "Brevibacterium spongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026168515.1", "bioproject": "PRJNA224116", "biosample": "SAMN24858633", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2909672", "species_taxid": "2909672", "organism_name": "Brevibacterium spongiae", "infraspecific_name": "strain=WHS-Z9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/24", "asm_name": "ASM2616851v1", "asm_submitter": "Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_026168515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/168/515/GCF_026168515.1_ASM2616851v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4217721", "genome_size_ungapped": "4217721", "gc_percent": "64.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026168515.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "3788", "protein_coding_gene_count": "3690", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-24", "dateModified": "2022-08-24", "datePublished": "2022-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium spongiae" ], "sample_taxid": [ "2909672" ], "sample_host_organism": [ "sponge" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=CGMCC 1.15472", "accession": "GCA_014643055.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 86.6744, "matched_fragments": 1102, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium permense", "strain": "strain=VKM Ac-2280", "accession": "GCA_013280495.1", "taxid": 234834, "species_taxid": 234834, "relation_to_type": "type", "validated": true, "ani": 86.5907, "matched_fragments": 992, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_900169165.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5841, "matched_fragments": 1000, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium iodinum", "strain": "strain=ATCC 49514", "accession": "GCA_900169265.1", "taxid": 31943, "species_taxid": 31943, "relation_to_type": "type", "validated": true, "ani": 86.5447, "matched_fragments": 962, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_008868375.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5429, "matched_fragments": 985, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium siliguriense", "strain": "strain=DSM 23676", "accession": "GCA_900105315.1", "taxid": 1136497, "species_taxid": 1136497, "relation_to_type": "type", "validated": true, "ani": 86.2163, "matched_fragments": 1059, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium oceani", "strain": "strain=BBH7", "accession": "GCA_013623835.1", "taxid": 358099, "species_taxid": 358099, "relation_to_type": "type", "validated": true, "ani": 85.732, "matched_fragments": 1059, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium atlanticum", "strain": "strain=WO024", "accession": "GCA_011617245.1", "taxid": 2697563, "species_taxid": 2697563, "relation_to_type": "type", "validated": true, "ani": 85.4763, "matched_fragments": 1023, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=FDAARGOS_936", "accession": "GCA_016026595.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 81.5279, "matched_fragments": 802, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": 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909936, "relation_to_type": "type", "validated": true, "ani": 77.9078, "matched_fragments": 335, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 77.2512, "matched_fragments": 233, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011617465.1", "gtdb_species": "s__Brevibacterium sp011617465", "ani": 87.2145, "matched_fragments": 1084, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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