{ "type": "genome", "identifier": "GCF_026191655.1", "organism": "Vibrio paucivorans", "title": "Vibrio paucivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ocean university of china", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026191655.1", "bioproject": "PRJNA224116", "biosample": "SAMN25824116", "wgs_master": "JAKRRX000000000.1", "refseq_category": "reference genome", "taxid": "2829489", "species_taxid": "2829489", "organism_name": "Vibrio paucivorans", "infraspecific_name": "strain=DBSS07", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/15", "asm_name": "ASM2619165v1", "asm_submitter": "ocean university of china", "gbrs_paired_asm": "GCA_026191655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/191/655/GCF_026191655.1_ASM2619165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5035848", "genome_size_ungapped": "5035848", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "475", "contig_count": "475", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026191655.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4760", "protein_coding_gene_count": "4534", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-15", "dateModified": "2022-11-15", "datePublished": "2022-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio paucivorans" ], "sample_taxid": [ "2829489" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Bohai Sea" ], "sample_host_location_id": [], "data_size": "1.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5035848", "Number of Sequences": "475", "Longest Sequences (bp)": "104048", "N50 (bp)": "26243", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "4336", "Average Protein Length": "318.0", "Coding Ratio (%)": "82.1", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 81.1073, "matched_fragments": 495, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9265, "matched_fragments": 483, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8536, "matched_fragments": 503, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.8326, "matched_fragments": 398, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rotiferianus", "strain": "strain=CAIM 577", "accession": "GCA_002741985.1", "taxid": 190895, "species_taxid": 190895, "relation_to_type": "type", "validated": true, "ani": 80.7926, "matched_fragments": 414, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 80.6713, "matched_fragments": 457, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.6517, "matched_fragments": 457, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bivalvicida", "strain": "strain=605", "accession": "GCA_001399455.2", "taxid": 1276888, "species_taxid": 1276888, "relation_to_type": "type", "validated": true, "ani": 80.6267, "matched_fragments": 464, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.5687, "matched_fragments": 473, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000176235.1", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.5631, "matched_fragments": 463, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4716, "matched_fragments": 423, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4444, "matched_fragments": 427, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 80.4108, "matched_fragments": 443, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, "relation_to_type": "type", "validated": true, "ani": 80.3874, "matched_fragments": 416, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio maerlii", "strain": "strain=G62", "accession": "GCA_003415655.1", "taxid": 2231648, "species_taxid": 2231648, "relation_to_type": "type", "validated": true, "ani": 80.2799, "matched_fragments": 370, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio profundi", "strain": "strain=TP187", "accession": "GCA_005281835.1", "taxid": 1774960, "species_taxid": 1774960, "relation_to_type": "type", "validated": true, "ani": 80.2725, "matched_fragments": 449, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hangzhouensis", "strain": "strain=CGMCC 1.7062", "accession": "GCA_900107935.1", "taxid": 462991, "species_taxid": 462991, "relation_to_type": "type", "validated": true, "ani": 80.2154, "matched_fragments": 276, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 80.0887, "matched_fragments": 377, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 80.0632, "matched_fragments": 318, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio artabrorum", "strain": "strain=CECT 7226", "accession": "GCA_024347295.1", "taxid": 446374, "species_taxid": 446374, "relation_to_type": "type", "validated": true, "ani": 80.0393, "matched_fragments": 391, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cyclitrophicus", "strain": "strain=LMG 21359", "accession": "GCA_024347435.1", "taxid": 47951, "species_taxid": 47951, "relation_to_type": "type", "validated": true, "ani": 79.9151, "matched_fragments": 429, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.915, "matched_fragments": 347, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 79.9115, "matched_fragments": 381, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.8439, "matched_fragments": 354, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 79.6909, "matched_fragments": 347, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.6562, "matched_fragments": 379, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ishigakensis", "strain": "strain=JCM 19231", "accession": "GCA_024347675.1", "taxid": 1481914, "species_taxid": 1481914, "relation_to_type": "type", "validated": true, "ani": 79.6518, "matched_fragments": 215, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 79.6238, "matched_fragments": 362, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquimaris", "strain": "strain=THAF100", "accession": "GCA_009363415.1", "taxid": 2587862, "species_taxid": 2587862, "relation_to_type": "type", "validated": true, "ani": 79.44, "matched_fragments": 234, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallicus", "strain": "strain=CIP 107863", "accession": "GCA_024346875.1", "taxid": 190897, "species_taxid": 190897, "relation_to_type": "type", "validated": true, "ani": 79.2555, "matched_fragments": 172, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 79.0513, "matched_fragments": 239, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_024346995.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 78.734, "matched_fragments": 159, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio metschnikovii", "strain": "strain=CIP 69.14", "accession": "GCA_000176155.1", "taxid": 28172, "species_taxid": 28172, "relation_to_type": "type", "validated": true, "ani": 78.6218, "matched_fragments": 211, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_900162645.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 78.6164, "matched_fragments": 161, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001695575.1", "gtdb_species": "s__Vibrio europaeus", "ani": 81.1205, "matched_fragments": 494, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004551525.1", "gtdb_species": "s__Vibrio ouci", "ani": 80.9877, "matched_fragments": 493, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000808535.1", "gtdb_species": "s__Vibrio sinaloensis", "ani": 80.943, "matched_fragments": 452, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_013114545.1", "gtdb_species": "s__Vibrio sp013114545", "ani": 80.8061, "matched_fragments": 444, "total_fragments": 1485, "gtdb_taxonomy": 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