{ "type": "genome", "identifier": "GCF_026191675.1", "organism": "Vibrio qingdaonensis", "title": "Vibrio qingdaonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ocean university of china", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026191675.1", "bioproject": "PRJNA224116", "biosample": "SAMN25825935", "wgs_master": "JAKRRY000000000.1", "refseq_category": "reference genome", "taxid": "2829491", "species_taxid": "2829491", "organism_name": "Vibrio qingdaonensis", "infraspecific_name": "strain=ZSDZ65", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/15", "asm_name": "ASM2619167v1", "asm_submitter": "ocean university of china", "gbrs_paired_asm": "GCA_026191675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/191/675/GCF_026191675.1_ASM2619167v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5702673", "genome_size_ungapped": "5702673", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "223", "contig_count": "223", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026191675.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "5233", "protein_coding_gene_count": "4989", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-15", "dateModified": "2022-11-15", "datePublished": "2022-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio qingdaonensis" ], "sample_taxid": [ "2829491" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Qingdao" ], "sample_host_location_id": [], "data_size": "1.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5702673", "Number of Sequences": "223", "Longest Sequences (bp)": "443472", "N50 (bp)": "117086", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.3", "Number of CDSs": "5021", "Average Protein Length": "318.9", "Coding Ratio (%)": "84.2", "Number of rRNAs": "2", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 80.128, "matched_fragments": 324, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "", "accession": "GCA_900088415.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 80.0289, "matched_fragments": 565, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio barjaei", "strain": "strain=3062", "accession": "GCA_001639065.2", "taxid": 1676683, "species_taxid": 1676683, "relation_to_type": "type", "validated": true, "ani": 79.9954, "matched_fragments": 568, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 79.9456, "matched_fragments": 503, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "strain=NBRC 15635", "accession": "GCA_001591125.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 79.9229, "matched_fragments": 575, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 79.8688, "matched_fragments": 315, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8442, "matched_fragments": 312, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7543, "matched_fragments": 307, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7395, "matched_fragments": 300, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio variabilis", "strain": "strain=CAIM 1454", "accession": "GCA_003263785.1", "taxid": 990271, "species_taxid": 990271, "relation_to_type": "type", "validated": true, "ani": 79.6706, "matched_fragments": 496, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio kanaloae", "strain": "strain=CCUG 56968", "accession": "GCA_008801285.1", "taxid": 170673, "species_taxid": 170673, "relation_to_type": "type", "validated": true, "ani": 79.6494, "matched_fragments": 302, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio kanaloae", "strain": "strain=LMG 20539", "accession": "GCA_024347535.1", "taxid": 170673, "species_taxid": 170673, "relation_to_type": "type", "validated": true, "ani": 79.59, "matched_fragments": 300, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 79.4854, "matched_fragments": 330, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.3793, "matched_fragments": 294, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.3296, "matched_fragments": 306, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.3095, "matched_fragments": 255, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 79.0938, "matched_fragments": 282, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mexicanus", "strain": "strain=CAIM 1540", "accession": "GCA_001012815.1", "taxid": 1004326, "species_taxid": 1004326, "relation_to_type": "type", "validated": true, "ani": 79.0154, "matched_fragments": 283, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_002906655.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 78.9658, "matched_fragments": 316, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_000818435.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 78.9439, "matched_fragments": 313, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.9021, "matched_fragments": 278, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8497, "matched_fragments": 230, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": "GCA_001989995.2", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 78.364, "matched_fragments": 246, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio qinghaiensis", "strain": "strain=Q67", "accession": "GCA_002257545.1", "taxid": 2025808, "species_taxid": 2025808, "relation_to_type": "type", "validated": true, "ani": 78.3564, "matched_fragments": 245, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=NCTC12159", "accession": "GCA_900452855.1", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 78.3236, "matched_fragments": 264, "total_fragments": 1821, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002873335.1", "gtdb_species": "s__Vibrio sp002873335", "ani": 82.1292, "matched_fragments": 840, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000272045.2", "gtdb_species": "s__Vibrio crassostreae_C", "ani": 80.2705, "matched_fragments": 335, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.007, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_900088415.1", "gtdb_species": "s__Vibrio mediterranei", "ani": 80.0288, "matched_fragments": 565, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.1582, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_001639065.2", "gtdb_species": "s__Vibrio barjaei", "ani": 79.9865, "matched_fragments": 569, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.1582, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900089835.1", "gtdb_species": "s__Vibrio thalassae", "ani": 79.9386, "matched_fragments": 504, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.8081, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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sp002875705", "ani": 79.797, "matched_fragments": 329, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_000755425.1", "gtdb_species": "s__Vibrio maritimus_A", "ani": 79.7962, "matched_fragments": 500, "total_fragments": 1821, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005281815.1", "gtdb_species": "s__Vibrio chagasii", "ani": 79.7493, "matched_fragments": 299, 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