{ "type": "genome", "identifier": "GCF_026229185.1", "organism": "Fodinibius salsisoli", "title": "Fodinibius salsisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026229185.1", "bioproject": "PRJNA224116", "biosample": "SAMN18452662", "wgs_master": "JAGGJA000000000.1", "refseq_category": "reference genome", "taxid": "2820877", "species_taxid": "2820877", "organism_name": "Fodinibius salsisoli", "infraspecific_name": "strain=1BSP15-2V2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/17", "asm_name": "ASM2622918v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_026229185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/229/185/GCF_026229185.1_ASM2622918v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4850852", "genome_size_ungapped": "4850660", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026229185.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "4144", "protein_coding_gene_count": "4064", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-17", "dateModified": "2022-11-17", "datePublished": "2022-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Fodinibius salsisoli" ], "sample_taxid": [ "2820877" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Marismas del Odiel, Huelva" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4850852", "Number of Sequences": "43", "Longest Sequences (bp)": "654738", "N50 (bp)": "309219", "Gap Ratio (%)": "0.003958", "GCcontent (%)": "44.5", "Number of CDSs": "3991", "Average Protein Length": "348.5", "Coding Ratio (%)": "86.0", "Number of rRNAs": "5", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliifodinibius sediminis", "strain": "strain=DSM 21194", "accession": "GCA_900182555.1", "taxid": 1214077, "species_taxid": 1214077, "relation_to_type": "type", "validated": true, "ani": 78.5826, "matched_fragments": 240, "total_fragments": 1596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliifodinibius halophilus", "strain": "strain=2W32", "accession": "GCA_011059105.1", "taxid": 1736908, "species_taxid": 1736908, "relation_to_type": "type", "validated": true, "ani": 77.8996, "matched_fragments": 169, "total_fragments": 1596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliifodinibius roseus", "strain": "strain=DSM 21986", "accession": "GCA_900129315.1", "taxid": 1194090, "species_taxid": 1194090, "relation_to_type": "type", "validated": true, "ani": 77.7957, "matched_fragments": 229, "total_fragments": 1596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliifodinibius saliphilus", "strain": "strain=ECH52", "accession": "GCA_005869845.1", "taxid": 1920650, "species_taxid": 1920650, "relation_to_type": "type", "validated": true, "ani": 77.0931, "matched_fragments": 129, "total_fragments": 1596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fodinibius salinus", "strain": "strain=DSM 21935", "accession": "GCA_008124865.1", "taxid": 860790, "species_taxid": 860790, "relation_to_type": "type", "validated": true, "ani": 76.9754, "matched_fragments": 130, "total_fragments": 1596, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002287075.1", "gtdb_species": "s__Fodinibius sp002287075", "ani": 78.7496, "matched_fragments": 156, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900182555.1", "gtdb_species": "s__Aliifodinibius sediminis", "ani": 78.5937, "matched_fragments": 240, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Aliifodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011059105.1", "gtdb_species": "s__Fodinibius halophilus", "ani": 77.9205, "matched_fragments": 168, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129315.1", "gtdb_species": "s__Aliifodinibius roseus", "ani": 77.7809, "matched_fragments": 230, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Aliifodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005869845.1", "gtdb_species": "s__Fodinibius saliphilus", "ani": 77.1141, "matched_fragments": 128, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008124865.1", "gtdb_species": "s__Fodinibius salinus", "ani": 76.9617, "matched_fragments": 130, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016937115.1", "gtdb_species": "s__SMO-BIN1 sp016937115", "ani": 75.9949, "matched_fragments": 68, "total_fragments": 1596, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__SMO-BIN1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.0, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 37.0, "optimum_ph": 7.75, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fodinibius", "salsisoli" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }