{ "type": "genome", "identifier": "GCF_026239995.1", "organism": "Acetobacter suratthaniensis", "title": "Acetobacter suratthaniensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026239995.1", "bioproject": "PRJNA224116", "biosample": "SAMN31703545", "wgs_master": "JAPIUY000000000.1", "refseq_category": "reference genome", "taxid": "1502841", "species_taxid": "1502841", "organism_name": "Acetobacter suratthaniensis", "infraspecific_name": "strain=KACC 21252", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/19", "asm_name": "ASM2623999v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_026239995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/239/995/GCF_026239995.1_ASM2623999v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3108004", "genome_size_ungapped": "3108004", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026239995.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2888", "protein_coding_gene_count": "2790", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-19", "dateModified": "2022-11-19", "datePublished": "2022-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter suratthaniensis" ], "sample_taxid": [ "1502841" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3108004", "Number of Sequences": "50", "Longest Sequences (bp)": "756906", "N50 (bp)": "226626", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "2838", "Average Protein Length": "323.8", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter papayae", "strain": "strain=JCM 25143", "accession": "GCA_000613285.1", "taxid": 1076592, "species_taxid": 1076592, "relation_to_type": "type", "validated": true, "ani": 87.1313, "matched_fragments": 742, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter peroxydans", "strain": "strain=LMG 1635", "accession": "GCA_011516745.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": "type", "validated": true, "ani": 85.7613, "matched_fragments": 728, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter peroxydans", "strain": "strain=NBRC 13755", "accession": "GCA_006539345.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": "type", "validated": true, "ani": 85.7543, "matched_fragments": 747, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 80.0504, "matched_fragments": 452, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter okinawensis", "strain": "strain=JCM 25146", "accession": "GCA_000613865.1", "taxid": 1076594, "species_taxid": 1076594, "relation_to_type": "type", "validated": true, "ani": 79.7481, "matched_fragments": 416, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.6556, "matched_fragments": 444, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.6153, "matched_fragments": 444, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lambici", "strain": "strain=LMG 27439", "accession": "GCA_011516885.1", "taxid": 1332824, "species_taxid": 1332824, "relation_to_type": "type", "validated": true, "ani": 79.5284, "matched_fragments": 387, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter pasteurianus subsp. pasteurianus", "strain": "strain=NBRC 106471", "accession": "GCA_003850805.1", "taxid": 481145, "species_taxid": 438, "relation_to_type": "type", "validated": true, "ani": 79.0202, "matched_fragments": 296, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter pasteurianus subsp. pasteurianus", "strain": "strain=IFO 3191", "accession": "GCA_000241625.2", "taxid": 481145, "species_taxid": 438, "relation_to_type": "type", "validated": true, "ani": 78.923, "matched_fragments": 294, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter syzygii", "strain": "strain=9H-2", "accession": "GCA_000964225.1", "taxid": 146476, "species_taxid": 146476, "relation_to_type": "type", "validated": true, "ani": 78.7595, "matched_fragments": 323, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter syzygii", "strain": "strain=NBRC 16604", "accession": "GCA_007989285.1", "taxid": 146476, "species_taxid": 146476, "relation_to_type": "type", "validated": true, "ani": 78.7324, "matched_fragments": 326, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter intermedius", "strain": "strain=TF2", "accession": "GCA_000964425.1", "taxid": 66229, "species_taxid": 66229, "relation_to_type": "type", "validated": true, "ani": 77.9498, "matched_fragments": 199, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter oboediens", "strain": "strain=LMG 18849", "accession": "GCA_003207815.1", "taxid": 65958, "species_taxid": 65958, "relation_to_type": "type", "validated": true, "ani": 77.7408, "matched_fragments": 202, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter dulcium", "strain": "strain=LMG 1728", "accession": "GCA_014174165.1", "taxid": 2729096, "species_taxid": 2729096, "relation_to_type": "type", "validated": true, "ani": 77.6961, "matched_fragments": 162, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.6794, "matched_fragments": 117, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.3187, "matched_fragments": 126, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017377745.1", "gtdb_species": "s__Acetobacter suratthaniensis", "ani": 99.9701, "matched_fragments": 989, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000613285.1", "gtdb_species": "s__Acetobacter papayae", "ani": 87.1372, "matched_fragments": 742, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006539345.1", "gtdb_species": "s__Acetobacter peroxydans", "ani": 85.7538, "matched_fragments": 747, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011516925.1", "gtdb_species": "s__Acetobacter fabarum", "ani": 80.1202, "matched_fragments": 443, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_017377735.1", "gtdb_species": "s__Acetobacter sp017377735", "ani": 80.0676, "matched_fragments": 452, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008365315.1", "gtdb_species": "s__Acetobacter sp008365315", "ani": 80.0222, "matched_fragments": 422, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000613865.1", "gtdb_species": "s__Acetobacter okinawensis", "ani": 79.7481, "matched_fragments": 416, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014207635.1", "gtdb_species": "s__Acetobacter lovaniensis", "ani": 79.6153, "matched_fragments": 444, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011516885.1", "gtdb_species": "s__Acetobacter lambici", "ani": 79.5269, "matched_fragments": 386, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002153655.1", "gtdb_species": "s__Acetobacter okinawensis_A", "ani": 79.2562, "matched_fragments": 373, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000723785.2", "gtdb_species": "s__Acetobacter pasteurianus", "ani": 79.1322, "matched_fragments": 294, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_000964225.1", "gtdb_species": "s__Acetobacter syzygii", "ani": 78.7472, "matched_fragments": 324, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002738225.1", "gtdb_species": "s__Acetobacter pomorum", "ani": 78.7233, "matched_fragments": 287, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174165.1", "gtdb_species": "s__Gluconacetobacter dulcium", "ani": 77.6961, "matched_fragments": 162, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "97.86", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014174395.1", "gtdb_species": "s__Gluconacetobacter aggeris", "ani": 77.5273, "matched_fragments": 161, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 96.2181, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.234, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 28.404, "optimum_tmp": 29.785, "optimum_ph": 7.0, "genome_size": 3410623.727, "gc_content": 55.949, "coding_genes": 3181.851, "rRNA16S_genes": 4.233, "tRNA_genes": 57.388, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.875, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.7, "coccus_cell_shape": 0.1, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acetobacter", "suratthaniensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }