{ "type": "genome", "identifier": "GCF_026240635.1", "organism": "Trichothermofontia sichuanensis B231", "title": "Trichothermofontia sichuanensis B231", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Peking University Shenzhen Graduate School", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026240635.1", "bioproject": "PRJNA224116", "biosample": "SAMN31598886", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2016064", "species_taxid": "3045816", "organism_name": "Trichothermofontia sichuanensis B231", "infraspecific_name": "strain=B231", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/20", "asm_name": "ASM2624063v1", "asm_submitter": "Peking University Shenzhen Graduate School", "gbrs_paired_asm": "GCA_026240635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/240/635/GCF_026240635.1_ASM2624063v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4436989", "genome_size_ungapped": "4436989", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026240635.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "3800", "protein_coding_gene_count": "3703", "non_coding_gene_count": "55", "pubmed_id": "37180226" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-20", "dateModified": "2022-11-20", "datePublished": "2022-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Trichothermofontia sichuanensis B231" ], "sample_taxid": [ "2016064" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Ganzi Prefecture" ], "sample_host_location_id": [], "data_size": "1.259 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4436989", "Number of Sequences": "1", "Longest Sequences (bp)": "4436989", "N50 (bp)": "4436989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.9", "Number of CDSs": "3791", "Average Protein Length": "315.6", "Coding Ratio (%)": "80.9", "Number of rRNAs": "4", "Number of tRNAs": "46", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptodesmis sichuanensis", "strain": "strain=PKUAC-SCTA121", "accession": "GCA_021379005.1", "taxid": 2906798, "species_taxid": 2906798, "relation_to_type": "type", "validated": true, "ani": 77.3963, "matched_fragments": 124, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoleptolyngbya sichuanensis", "strain": "strain=PKUAC-SCTA183", "accession": "GCA_013177315.1", "taxid": 2885951, "species_taxid": 2885951, "relation_to_type": "type", "validated": true, "ani": 76.7432, "matched_fragments": 82, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicronema hongdechloris", "strain": "strain=C2206", "accession": "GCA_002075285.3", "taxid": 1209493, "species_taxid": 1209493, "relation_to_type": "type", "validated": true, "ani": 76.3725, "matched_fragments": 53, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kovacikia minuta", "strain": "strain=CCNU0001", "accession": "GCA_020091585.1", "taxid": 2931930, "species_taxid": 2931930, "relation_to_type": "type", "validated": true, "ani": 75.999, "matched_fragments": 84, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirulina major", "strain": "strain=PCC 6313", "accession": "GCA_001890765.1", "taxid": 270636, "species_taxid": 270636, "relation_to_type": "type", "validated": true, "ani": 75.9407, "matched_fragments": 83, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013177315.1", "gtdb_species": "s__O-77 sp013177315", "ani": 77.0023, "matched_fragments": 85, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__O-77", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016403105.1", "gtdb_species": "s__Nodosilinea sp016403105", "ani": 76.7537, "matched_fragments": 91, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000505665.1", "gtdb_species": "s__Thermosynechococcus sp000505665", "ani": 76.5992, "matched_fragments": 54, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.69", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000317045.1", "gtdb_species": "s__PCC-7407 sp000317045", "ani": 76.4948, "matched_fragments": 77, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-7407;f__PCC-7407;g__PCC-7407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009939295.1", "gtdb_species": "s__WVIC01 sp009939295", "ani": 76.2419, "matched_fragments": 71, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__WVIC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697375.1", "gtdb_species": "s__Nodosilinea sp014697375", "ani": 76.1511, "matched_fragments": 84, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697025.1", "gtdb_species": "s__MUGG01 sp014697025", "ani": 76.1322, "matched_fragments": 82, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__MUGG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000733415.1", "gtdb_species": "s__Elainella sp000733415", "ani": 76.1166, "matched_fragments": 83, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__Elainella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016743235.1", "gtdb_species": "s__Pantanalinema sp016743235", "ani": 76.0603, "matched_fragments": 67, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Pantanalinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000332335.1", "gtdb_species": "s__PCC-10802 sp000332335", "ani": 76.0523, "matched_fragments": 77, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae_A;g__PCC-10802", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012034055.1", "gtdb_species": "s__JAAUSG01 sp012034055", "ani": 75.8421, "matched_fragments": 63, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JAAUSG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000763385.1", "gtdb_species": "s__Nodosilinea sp000763385", "ani": 75.8049, "matched_fragments": 79, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015272515.1", "gtdb_species": "s__JSC-12 sp015272515", "ani": 75.7928, "matched_fragments": 59, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JSC-12", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004292515.1", "gtdb_species": "s__CACIAM-69d sp004292515", "ani": 75.7584, "matched_fragments": 62, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__CACIAM-69d;f__CACIAM-69d;g__CACIAM-69d", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014695325.1", "gtdb_species": "s__Leptolyngbya_A sp014695325", "ani": 75.7258, "matched_fragments": 64, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__Leptolyngbya_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003695655.1", "gtdb_species": "s__O-77 sp003695655", "ani": 75.7162, "matched_fragments": 63, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__O-77", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012033355.1", "gtdb_species": "s__JAAUTN01 sp012033355", "ani": 75.4771, "matched_fragments": 54, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__JAAUTN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014380065.1", "gtdb_species": "s__Stenomitos sp014380065", "ani": 75.3325, "matched_fragments": 50, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Stenomitos", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Trichothermofontia", "sichuanensis", "B231" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }