{ "type": "genome", "identifier": "GCF_026241225.1", "organism": "Lentiprolixibacter aurantiacus", "title": "Lentiprolixibacter aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute Of Oceanography,MNR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026241225.1", "bioproject": "PRJNA224116", "biosample": "SAMN31642921", "wgs_master": "JAPFQP000000000.1", "refseq_category": "reference genome", "taxid": "2993939", "species_taxid": "2993939", "organism_name": "Lentiprolixibacter aurantiacus", "infraspecific_name": "strain=M415", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/20", "asm_name": "ASM2624122v1", "asm_submitter": "Second Institute Of Oceanography,MNR", "gbrs_paired_asm": "GCA_026241225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/241/225/GCF_026241225.1_ASM2624122v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3134346", "genome_size_ungapped": "3134346", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026241225.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2879", "protein_coding_gene_count": "2828", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-20", "dateModified": "2022-11-20", "datePublished": "2022-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentiprolixibacter aurantiacus" ], "sample_taxid": [ "2993939" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Taizhou" ], "sample_host_location_id": [], "data_size": "0.891 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3134346", "Number of Sequences": "9", "Longest Sequences (bp)": "1553756", "N50 (bp)": "629109", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "2808", "Average Protein Length": "339.7", "Coding Ratio (%)": "91.3", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muriicola marianensis", "strain": "strain=CGMCC 1.12606", "accession": "GCA_014638095.1", "taxid": 1324801, "species_taxid": 1324801, "relation_to_type": "type", "validated": true, "ani": 77.1309, "matched_fragments": 125, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda oceani", "strain": "strain=501str8", "accession": "GCA_019457985.1", "taxid": 2698672, "species_taxid": 2698672, "relation_to_type": "type", "validated": true, "ani": 76.9989, "matched_fragments": 65, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda oceani", "strain": "strain=501str8", "accession": "GCA_011068285.1", "taxid": 2698672, "species_taxid": 2698672, "relation_to_type": "type", "validated": true, "ani": 76.9409, "matched_fragments": 65, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poritiphilus flavus", "strain": "strain=R33", "accession": "GCA_009901585.1", "taxid": 2697053, "species_taxid": 2697053, "relation_to_type": "type", "validated": true, "ani": 76.8902, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amoyensis", "strain": "strain=GCL-11", "accession": "GCA_003058265.1", "taxid": 2169401, "species_taxid": 2169401, "relation_to_type": "type", "validated": true, "ani": 76.7337, "matched_fragments": 79, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hadalis", "strain": "strain=MT-229", "accession": "GCA_007785775.2", "taxid": 2597517, "species_taxid": 2597517, "relation_to_type": "type", "validated": true, "ani": 76.729, "matched_fragments": 70, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zeaxanthinibacter enoshimensis", "strain": "strain=DSM 18435", "accession": "GCA_004362865.1", "taxid": 392009, "species_taxid": 392009, "relation_to_type": "type", "validated": true, "ani": 76.651, "matched_fragments": 103, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arenosus", "strain": "strain=CAU 1321", "accession": "GCA_014610845.1", "taxid": 1854708, "species_taxid": 1854708, "relation_to_type": "type", "validated": true, "ani": 76.5903, "matched_fragments": 69, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.5435, "matched_fragments": 66, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pareuzebyella sediminis", "strain": "strain=S2-4-21", "accession": "GCA_008367235.1", "taxid": 2607998, "species_taxid": 2607998, "relation_to_type": "type", "validated": true, "ani": 76.5409, "matched_fragments": 62, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda algicola", "strain": "strain=AsT0115", "accession": "GCA_005937185.1", "taxid": 2583815, "species_taxid": 2583815, "relation_to_type": "type", "validated": true, "ani": 76.5114, "matched_fragments": 71, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, "relation_to_type": "type", "validated": true, "ani": 76.4111, "matched_fragments": 59, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.3719, "matched_fragments": 50, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda beolgyonensis", "strain": "strain=KCTC 23501", "accession": "GCA_003992615.1", "taxid": 864064, "species_taxid": 864064, "relation_to_type": "type", "validated": true, "ani": 76.3667, "matched_fragments": 86, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robiginitalea myxolifaciens", "strain": "strain=DSM 21019", "accession": "GCA_900115205.1", "taxid": 400055, "species_taxid": 400055, "relation_to_type": "type", "validated": true, "ani": 76.1808, "matched_fragments": 85, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 76.0998, "matched_fragments": 71, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=DSM 23514", "accession": "GCA_003148665.1", "taxid": 429344, "species_taxid": 429344, 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"min_intra_species_af": "0.71", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014638095.1", "gtdb_species": "s__Muriicola marianensis", "ani": 77.1345, "matched_fragments": 124, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011068285.1", "gtdb_species": "s__Muricauda sp011068285", "ani": 76.9846, "matched_fragments": 63, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009901585.1", "gtdb_species": "s__R33 sp009901585", "ani": 76.8902, "matched_fragments": 116, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__R33", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003992595.1", "gtdb_species": "s__Muricauda sp002452975", "ani": 76.8365, "matched_fragments": 70, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000382125.1", 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1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zeaxanthinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362865.1", "gtdb_species": "s__Zeaxanthinibacter enoshimensis", "ani": 76.6511, "matched_fragments": 102, "total_fragments": 1040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zeaxanthinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014610845.1", "gtdb_species": "s__Maribacter_A arenosus", "ani": 76.5903, "matched_fragments": 69, "total_fragments": 1040, "gtdb_taxonomy": 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