{ "type": "genome", "identifier": "GCF_026248825.1", "organism": "Larkinella insperata", "title": "Larkinella insperata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology Institute of Shaanxi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026248825.1", "bioproject": "PRJNA224116", "biosample": "SAMN31711601", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "332158", "species_taxid": "332158", "organism_name": "Larkinella insperata", "infraspecific_name": "strain=LMG22510", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/21", "asm_name": "ASM2624882v1", "asm_submitter": "Microbiology Institute of Shaanxi", "gbrs_paired_asm": "GCA_026248825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/248/825/GCF_026248825.1_ASM2624882v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6564943", "genome_size_ungapped": "6564943", "gc_percent": "53.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026248825.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5269", "protein_coding_gene_count": "5203", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-21", "dateModified": "2022-11-21", "datePublished": "2022-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Larkinella insperata" ], "sample_taxid": [ "332158" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium:a pharmaceutical company" ], "sample_host_location_id": [], "data_size": "1.854 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6564943", "Number of Sequences": "1", "Longest Sequences (bp)": "6564943", "N50 (bp)": "6564943", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.3", "Number of CDSs": "5219", "Average Protein Length": "371.4", "Coding Ratio (%)": "88.6", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Larkinella arboricola", "strain": "strain=DSM 21851", "accession": "GCA_003259745.1", "taxid": 643671, "species_taxid": 643671, "relation_to_type": "type", "validated": true, "ani": 85.8495, "matched_fragments": 1762, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 79.8154, "matched_fragments": 1237, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella punicea", "strain": "strain=ZZJ9", "accession": "GCA_003334855.1", "taxid": 2315727, "species_taxid": 2315727, "relation_to_type": "type", "validated": true, "ani": 79.8094, "matched_fragments": 1260, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella terrae", "strain": "strain=KCTC 52001", "accession": "GCA_009668025.1", "taxid": 2025311, "species_taxid": 2025311, "relation_to_type": "type", "validated": true, "ani": 79.6386, "matched_fragments": 1205, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella knui", "strain": "strain=KCTC42998", "accession": "GCA_003858645.1", "taxid": 2025310, "species_taxid": 2025310, "relation_to_type": "type", "validated": true, "ani": 79.6305, "matched_fragments": 1207, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella rosea", "strain": "strain=KCTC52004", "accession": "GCA_003858635.1", "taxid": 2025312, "species_taxid": 2025312, "relation_to_type": "type", "validated": true, "ani": 79.5778, "matched_fragments": 1167, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 76.5997, "matched_fragments": 263, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.5611, "matched_fragments": 315, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 76.2626, "matched_fragments": 197, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 74.9214, "matched_fragments": 55, "total_fragments": 2188, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003259745.1", "gtdb_species": "s__Larkinella arboricola", "ani": 85.8455, "matched_fragments": 1763, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004366505.1", "gtdb_species": "s__Larkinella sp004366505", "ani": 84.3929, "matched_fragments": 1721, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006149005.1", "gtdb_species": "s__Larkinella sp006149005", "ani": 79.8346, "matched_fragments": 1255, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003334855.1", "gtdb_species": "s__Larkinella punicea", "ani": 79.8241, "matched_fragments": 1256, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008727875.1", "gtdb_species": "s__Larkinella sp008727875", "ani": 79.8204, "matched_fragments": 1236, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003858645.1", "gtdb_species": "s__Larkinella knui", "ani": 79.6383, "matched_fragments": 1206, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009668025.1", "gtdb_species": "s__Larkinella terrae", "ani": 79.6345, "matched_fragments": 1206, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003858635.1", "gtdb_species": "s__Larkinella rosea", "ani": 79.5823, "matched_fragments": 1165, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013127955.1", "gtdb_species": "s__Spirosoma taeanense", "ani": 76.6585, "matched_fragments": 264, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000296815.2", "gtdb_species": "s__Fibrisoma limi", "ani": 76.5207, "matched_fragments": 314, "total_fragments": 2188, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 7020148.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Larkinella", "insperata" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }