{ "type": "genome", "identifier": "GCF_026262595.1", "organism": "Gordonia aquimaris", "title": "Gordonia aquimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's Institute of Technology Ladkrabang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026262595.1", "bioproject": "PRJNA224116", "biosample": "SAMN31212690", "wgs_master": "JAPKFM000000000.1", "refseq_category": "reference genome", "taxid": "2984863", "species_taxid": "2984863", "organism_name": "Gordonia aquimaris", "infraspecific_name": "strain=SW21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/21", "asm_name": "ASM2626259v1", "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang", "gbrs_paired_asm": "GCA_026262595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/262/595/GCF_026262595.1_ASM2626259v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5393233", "genome_size_ungapped": "5393233", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026262595.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4959", "protein_coding_gene_count": "4813", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-21", "dateModified": "2022-11-21", "datePublished": "2022-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia aquimaris" ], "sample_taxid": [ "2984863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Chonburi" ], "sample_host_location_id": [], "data_size": "1.482 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5393233", "Number of Sequences": "99", "Longest Sequences (bp)": "430630", "N50 (bp)": "148331", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "4908", "Average Protein Length": "330.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 86.947, "matched_fragments": 1365, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_024734075.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 86.915, "matched_fragments": 1351, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 80.9944, "matched_fragments": 1029, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 80.6134, "matched_fragments": 927, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hankookensis", "strain": "strain=ON-33", "accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 80.4845, "matched_fragments": 941, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.3595, "matched_fragments": 828, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.305, "matched_fragments": 839, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=DSM 44461", "accession": "GCA_012395955.1", "taxid": 89053, "species_taxid": 89053, "relation_to_type": "type", "validated": true, "ani": 80.1867, "matched_fragments": 762, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 79.9077, "matched_fragments": 761, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8299, "matched_fragments": 789, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=3612", "accession": "GCA_001698225.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8229, "matched_fragments": 783, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NBRC 100016", "accession": "GCA_000248035.2", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.764, "matched_fragments": 775, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.2597, "matched_fragments": 626, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sihwensis", "strain": "strain=NBRC 108236", "accession": 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