{
    "type": "genome",
    "identifier": "GCF_026262645.1",
    "organism": "Candidatus Marimicrobium litorale",
    "title": "Candidatus Marimicrobium litorale",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INHA UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026262645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10929369",
        "wgs_master": "SHNO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2518991",
        "species_taxid": "2518991",
        "organism_name": "Candidatus Marimicrobium litorale",
        "infraspecific_name": "strain=IMCC11814",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/21",
        "asm_name": "ASM2626264v1",
        "asm_submitter": "INHA UNIVERSITY",
        "gbrs_paired_asm": "GCA_026262645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/262/645/GCF_026262645.1_ASM2626264v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4076518",
        "genome_size_ungapped": "4076518",
        "gc_percent": "54.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_026262645.1-RS_2024_04_14",
        "annotation_date": "2024-04-14",
        "total_gene_count": "3619",
        "protein_coding_gene_count": "3547",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-21",
    "dateModified": "2022-11-21",
    "datePublished": "2022-11-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Marimicrobium litorale"
        ],
        "sample_taxid": [
            "2518991"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.165 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4076518",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "3696012",
        "N50 (bp)": "3696012",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.6",
        "Number of CDSs": "3623",
        "Average Protein Length": "330.6",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parahaliea mediterranea",
                "strain": "strain=DSM 21924",
                "accession": "GCA_003402235.1",
                "taxid": 651086,
                "species_taxid": 651086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2603,
                "matched_fragments": 110,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella unica",
                "strain": "strain=GH4-78",
                "accession": "GCA_004354085.1",
                "taxid": 2547392,
                "species_taxid": 2547392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9098,
                "matched_fragments": 110,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineobactrum salinum",
                "strain": "strain=M2",
                "accession": "GCA_010669285.1",
                "taxid": 2708301,
                "species_taxid": 2708301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7319,
                "matched_fragments": 80,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea maris",
                "strain": "strain=HSLHS9",
                "accession": "GCA_008064665.1",
                "taxid": 2716870,
                "species_taxid": 2716870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5867,
                "matched_fragments": 95,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella sediminis",
                "strain": "strain=U0301",
                "accession": "GCA_003457605.1",
                "taxid": 2283635,
                "species_taxid": 2283635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5751,
                "matched_fragments": 110,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliea alexandrii",
                "strain": "strain=LZ-16-2",
                "accession": "GCA_003719295.1",
                "taxid": 2448162,
                "species_taxid": 2448162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5741,
                "matched_fragments": 93,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminihaliea albiluteola",
                "strain": "strain=F7430",
                "accession": "GCA_014077625.1",
                "taxid": 2758564,
                "species_taxid": 2758564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5164,
                "matched_fragments": 61,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=NBRC 107739",
                "accession": "GCA_001983995.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4929,
                "matched_fragments": 81,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=S1-36",
                "accession": "GCA_002869505.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3749,
                "matched_fragments": 81,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=KCTC 23429",
                "accession": "GCA_014652255.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3729,
                "matched_fragments": 83,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus pacificus",
                "strain": "strain=KCTC 23430",
                "accession": "GCA_014652275.1",
                "taxid": 930806,
                "species_taxid": 930806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1036,
                "matched_fragments": 78,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905480565.1",
                "gtdb_species": "s__Halioglobus sp905480565",
                "ani": 89.9109,
                "matched_fragments": 710,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002699145.1",
                "gtdb_species": "s__Halioglobus sp002699145",
                "ani": 77.1588,
                "matched_fragments": 143,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004354085.1",
                "gtdb_species": "s__Halioglobus sp004354085",
                "ani": 76.9115,
                "matched_fragments": 109,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004745945.1",
                "gtdb_species": "s__Halioglobus sp004745945",
                "ani": 76.8396,
                "matched_fragments": 82,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010669285.1",
                "gtdb_species": "s__Kineobactrum salinum",
                "ani": 76.7319,
                "matched_fragments": 80,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Kineobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016704305.1",
                "gtdb_species": "s__Halioglobus sp016704305",
                "ani": 76.632,
                "matched_fragments": 137,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008064665.1",
                "gtdb_species": "s__Parahaliea maris",
                "ani": 76.5921,
                "matched_fragments": 96,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902705825.1",
                "gtdb_species": "s__Halioglobus japonicus_A",
                "ani": 76.5292,
                "matched_fragments": 123,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014077625.1",
                "gtdb_species": "s__Parahaliea sp014077625",
                "ani": 76.4762,
                "matched_fragments": 61,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013214285.1",
                "gtdb_species": "s__Halioglobus sp013214285",
                "ani": 76.4728,
                "matched_fragments": 115,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001983995.1",
                "gtdb_species": "s__Halioglobus japonicus",
                "ani": 76.462,
                "matched_fragments": 81,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_009937575.1",
                "gtdb_species": "s__Halioglobus sp009937575",
                "ani": 76.3562,
                "matched_fragments": 122,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003646415.1",
                "gtdb_species": "s__Halioglobus sp003646415",
                "ani": 76.3053,
                "matched_fragments": 68,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Candidatus",
        "Marimicrobium",
        "litorale"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}