{
    "type": "genome",
    "identifier": "GCF_026283965.1",
    "organism": "Dyella subtropica",
    "title": "Dyella subtropica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology, Guangdong Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026283965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN31468943",
        "wgs_master": "JAPDPD000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2992127",
        "species_taxid": "2992127",
        "organism_name": "Dyella subtropica",
        "infraspecific_name": "strain=RXD159",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/22",
        "asm_name": "ASM2628396v1",
        "asm_submitter": "Institute of Microbiology, Guangdong Academy of Sciences",
        "gbrs_paired_asm": "GCA_026283965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/283/965/GCF_026283965.1_ASM2628396v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4954565",
        "genome_size_ungapped": "4954565",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "46",
        "contig_count": "46",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_026283965.1-RS_2024_05_12",
        "annotation_date": "2024-05-12",
        "total_gene_count": "4143",
        "protein_coding_gene_count": "4066",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-22",
    "dateModified": "2022-11-22",
    "datePublished": "2022-11-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dyella subtropica"
        ],
        "sample_taxid": [
            "2992127"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangdong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.385 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4954565",
        "Number of Sequences": "46",
        "Longest Sequences (bp)": "581938",
        "N50 (bp)": "183667",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.8",
        "Number of CDSs": "4171",
        "Average Protein Length": "344.7",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dyella solisilvae",
                "strain": "strain=DHG54",
                "accession": "GCA_003351225.1",
                "taxid": 1920168,
                "species_taxid": 1920168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7498,
                "matched_fragments": 722,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella kyungheensis",
                "strain": "strain=THG-B117",
                "accession": "GCA_016905005.1",
                "taxid": 1242174,
                "species_taxid": 1242174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.652,
                "matched_fragments": 755,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella amyloliquefaciens",
                "strain": "strain=DHC06",
                "accession": "GCA_004296575.1",
                "taxid": 1770545,
                "species_taxid": 1770545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4511,
                "matched_fragments": 766,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella japonica",
                "strain": "strain=DSM 16301",
                "accession": "GCA_001010355.1",
                "taxid": 231455,
                "species_taxid": 231455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4377,
                "matched_fragments": 611,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=DSM 14263",
                "accession": "GCA_003148905.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3664,
                "matched_fragments": 702,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=LMG 19981",
                "accession": "GCA_006352285.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.344,
                "matched_fragments": 661,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella telluris",
                "strain": "strain=G9",
                "accession": "GCA_014297575.1",
                "taxid": 2763498,
                "species_taxid": 2763498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2634,
                "matched_fragments": 768,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria terrea",
                "strain": "strain=DSM 26515",
                "accession": "GCA_900109025.1",
                "taxid": 529704,
                "species_taxid": 529704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8104,
                "matched_fragments": 584,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria terrea",
                "strain": "strain=CGMCC 1.7053",
                "accession": "GCA_900115705.1",
                "taxid": 529704,
                "species_taxid": 529704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.743,
                "matched_fragments": 588,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria flava",
                "strain": "strain=MAH-13",
                "accession": "GCA_017837635.1",
                "taxid": 2821489,
                "species_taxid": 2821489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6518,
                "matched_fragments": 580,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella acidiphila",
                "strain": "strain=7MK23",
                "accession": "GCA_014863405.1",
                "taxid": 2775866,
                "species_taxid": 2775866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3857,
                "matched_fragments": 666,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter caeni",
                "strain": "strain=BUT-6",
                "accession": "GCA_024609805.1",
                "taxid": 1453545,
                "species_taxid": 1453545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.821,
                "matched_fragments": 324,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900114495.1",
                "gtdb_species": "s__Dyella sp900114495",
                "ani": 84.3009,
                "matched_fragments": 1040,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112865.1",
                "gtdb_species": "s__Dyella marensis",
                "ani": 83.0212,
                "matched_fragments": 907,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012275375.1",
                "gtdb_species": "s__Dyella sp012275375",
                "ani": 82.8764,
                "matched_fragments": 963,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.64",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001428405.1",
                "gtdb_species": "s__Frateuria_A sp001428405",
                "ani": 81.8356,
                "matched_fragments": 732,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016586165.1",
                "gtdb_species": "s__Dyella sp016586165",
                "ani": 81.7441,
                "matched_fragments": 754,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003351225.1",
                "gtdb_species": "s__Dyella solisilvae",
                "ani": 81.7137,
                "matched_fragments": 726,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016905005.1",
                "gtdb_species": "s__Dyella kyungheensis",
                "ani": 81.6077,
                "matched_fragments": 760,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001010355.1",
                "gtdb_species": "s__Dyella japonica",
                "ani": 81.471,
                "matched_fragments": 608,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004296575.1",
                "gtdb_species": "s__Dyella sp004296575",
                "ani": 81.447,
                "matched_fragments": 766,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003688835.1",
                "gtdb_species": "s__Dyella sp003688835",
                "ani": 81.2979,
                "matched_fragments": 730,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014297575.1",
                "gtdb_species": "s__Dyella sp014297575",
                "ani": 81.235,
                "matched_fragments": 771,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001428385.1",
                "gtdb_species": "s__Rhodanobacter sp001428385",
                "ani": 81.0196,
                "matched_fragments": 669,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014842975.1",
                "gtdb_species": "s__Rhodanobacter sp014842975",
                "ani": 80.9869,
                "matched_fragments": 684,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013620825.1",
                "gtdb_species": "s__Rhodanobacter sp001899565",
                "ani": 80.9284,
                "matched_fragments": 661,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016889805.1",
                "gtdb_species": "s__Rhodanobacter sp001427365",
                "ani": 80.8493,
                "matched_fragments": 652,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.107,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900115705.1",
                "gtdb_species": "s__Frateuria_A terrea",
                "ani": 80.7542,
                "matched_fragments": 587,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013362045.1",
                "gtdb_species": "s__Frateuria_A sp013362045",
                "ani": 80.7156,
                "matched_fragments": 533,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016428905.1",
                "gtdb_species": "s__Dyella sp016428905",
                "ani": 80.5693,
                "matched_fragments": 651,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.414,
        "cell_length": 0.291,
        "doubling_h": null,
        "growth_tmp": 28.444,
        "optimum_tmp": 29.444,
        "optimum_ph": 6.927,
        "genome_size": 4785947.716,
        "gc_content": 65.733,
        "coding_genes": 4123.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.666,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Dyella",
        "subtropica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}