{ "type": "genome", "identifier": "GCF_026344075.1", "organism": "Enterobacter nematophilus", "title": "Enterobacter nematophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Neuchatel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026344075.1", "bioproject": "PRJNA224116", "biosample": "SAMN31693418", "wgs_master": "JAPKNE000000000.1", "refseq_category": "reference genome", "taxid": "2994648", "species_taxid": "2994648", "organism_name": "Enterobacter nematophilus", "infraspecific_name": "strain=E-TC7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/23", "asm_name": "ASM2634407v1", "asm_submitter": "University of Neuchatel", "gbrs_paired_asm": "GCA_026344075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/344/075/GCF_026344075.1_ASM2634407v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4708215", "genome_size_ungapped": "4708215", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026344075.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "4418", "protein_coding_gene_count": "4296", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-23", "dateModified": "2022-11-23", "datePublished": "2022-11-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter nematophilus" ], "sample_taxid": [ "2994648" ], "sample_host_organism": [ "nematode" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.331 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4708215", "Number of Sequences": "19", "Longest Sequences (bp)": "1417583", "N50 (bp)": "603234", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "4312", "Average Protein Length": "327.3", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 95.5973, "matched_fragments": 1414, "total_fragments": 1560, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 95.5331, "matched_fragments": 1420, "total_fragments": 1560, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 92.0726, "matched_fragments": 1298, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 92.0606, "matched_fragments": 1288, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 91.7391, "matched_fragments": 1248, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=FDAARGOS 1430", "accession": "GCA_019047025.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 91.6609, "matched_fragments": 1339, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_001729805.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 91.5999, "matched_fragments": 1354, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 91.2919, "matched_fragments": 1321, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_002939185.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 90.4638, "matched_fragments": 1240, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 90.4559, "matched_fragments": 1274, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter quasimori", "strain": "strain=090044", "accession": "GCA_003964905.1", "taxid": 2838947, "species_taxid": 2838947, "relation_to_type": "type", "validated": true, "ani": 90.274, "matched_fragments": 1296, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter mori", "strain": "strain=LMG 25706", "accession": "GCA_000211415.1", "taxid": 539813, "species_taxid": 539813, "relation_to_type": "type", "validated": true, "ani": 89.8002, "matched_fragments": 1286, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 89.3456, "matched_fragments": 1268, "total_fragments": 1560, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_000213995.1", 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