{
    "type": "genome",
    "identifier": "GCF_026344095.1",
    "organism": "Alcaligenes faecalis",
    "title": "Alcaligenes faecalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Neuchatel",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026344095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN31693416",
        "wgs_master": "JAPKNC000000000.1",
        "refseq_category": "na",
        "taxid": "511",
        "species_taxid": "511",
        "organism_name": "Alcaligenes faecalis",
        "infraspecific_name": "strain=DSM 30030",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/23",
        "asm_name": "ASM2634409v1",
        "asm_submitter": "University of Neuchatel",
        "gbrs_paired_asm": "GCA_026344095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/344/095/GCF_026344095.1_ASM2634409v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4003996",
        "genome_size_ungapped": "4003996",
        "gc_percent": "56.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_026344095.1-RS_2025_01_02",
        "annotation_date": "2025-01-02",
        "total_gene_count": "3736",
        "protein_coding_gene_count": "3659",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-23",
    "dateModified": "2022-11-23",
    "datePublished": "2022-11-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenes faecalis"
        ],
        "sample_taxid": [
            "511"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.135 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4003996",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "1192102",
        "N50 (bp)": "348684",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "3701",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alcaligenes faecalis subsp. faecalis",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
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                "accession": "GCA_000739855.1",
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                "relation_to_type": "type",
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                "ani": 99.9969,
                "matched_fragments": 1316,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes faecalis",
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                "ani": 99.9966,
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                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes faecalis",
                "strain": "strain=ATCC 8750",
                "accession": "GCA_001298815.1",
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                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9946,
                "matched_fragments": 1321,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes ammonioxydans",
                "strain": "strain=HO-1",
                "accession": "GCA_019343455.1",
                "taxid": 2582914,
                "species_taxid": 2582914,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1056,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes pakistanensis",
                "strain": "strain=KCTC 42083",
                "accession": "GCA_014652815.1",
                "taxid": 1482717,
                "species_taxid": 1482717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.733,
                "matched_fragments": 1120,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas faecipullorum",
                "strain": "strain=CC-YST705",
                "accession": "GCA_020539505.1",
                "taxid": 2755040,
                "species_taxid": 2755040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1606,
                "matched_fragments": 124,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC 13520",
                "accession": "GCA_024168865.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9551,
                "matched_fragments": 208,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella bronchiseptica",
                "strain": "strain=CCUG 219",
                "accession": "GCA_021391275.1",
                "taxid": 518,
                "species_taxid": 518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.927,
                "matched_fragments": 177,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
                "strain": "strain=NF 2-5-3",
                "accession": "GCA_007995085.1",
                "taxid": 2057004,
                "species_taxid": 2057004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3677,
                "matched_fragments": 64,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans radicicola",
                "strain": "strain=JUR4",
                "accession": "GCA_014837235.1",
                "taxid": 2771427,
                "species_taxid": 2771427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2508,
                "matched_fragments": 75,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002443155.1",
                "gtdb_species": "s__Alcaligenes faecalis",
                "ani": 99.9966,
                "matched_fragments": 1323,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 22,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009497775.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005311025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
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                "mean_intra_species_ani": "97.79",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
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            },
            {
                "accession": "GCF_003076515.1",
                "gtdb_species": "s__Alcaligenes aquatilis",
                "ani": 90.9208,
                "matched_fragments": 1114,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
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            },
            {
                "accession": "GCF_017377875.1",
                "gtdb_species": "s__Alcaligenes sp017377875",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
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        "doubling_h": null,
        "growth_tmp": 32.0,
        "optimum_tmp": 30.5,
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        "coding_genes": 3698.667,
        "rRNA16S_genes": 3.0,
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        "gram_stain": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "faecalis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}