{ "type": "genome", "identifier": "GCF_026344175.1", "organism": "Acinetobacter nematophilus", "title": "Acinetobacter nematophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Neuchatel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026344175.1", "bioproject": "PRJNA224116", "biosample": "SAMN31693412", "wgs_master": "JAPKMY000000000.1", "refseq_category": "reference genome", "taxid": "2994642", "species_taxid": "2994642", "organism_name": "Acinetobacter nematophilus", "infraspecific_name": "strain=A-IN1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/23", "asm_name": "ASM2634417v1", "asm_submitter": "University of Neuchatel", "gbrs_paired_asm": "GCA_026344175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/344/175/GCF_026344175.1_ASM2634417v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4360075", "genome_size_ungapped": "4360075", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026344175.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "4093", "protein_coding_gene_count": "3955", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-23", "dateModified": "2022-11-23", "datePublished": "2022-11-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter nematophilus" ], "sample_taxid": [ "2994642" ], "sample_host_organism": [ "nematode" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4360075", "Number of Sequences": "33", "Longest Sequences (bp)": "801561", "N50 (bp)": "329483", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "4014", "Average Protein Length": "304.8", "Coding Ratio (%)": "84.2", "Number of rRNAs": "0", "Number of tRNAs": "69", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 90.3132, "matched_fragments": 1227, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 83.3176, "matched_fragments": 1006, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 83.299, "matched_fragments": 995, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 81.6481, "matched_fragments": 769, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 81.3093, "matched_fragments": 694, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 81.2787, "matched_fragments": 690, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 80.4253, "matched_fragments": 598, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.7588, "matched_fragments": 510, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 79.4407, "matched_fragments": 390, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4135, "matched_fragments": 408, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 79.0585, "matched_fragments": 374, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.8497, "matched_fragments": 346, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.7746, "matched_fragments": 385, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": 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