{ "type": "genome", "identifier": "GCF_026420145.1", "organism": "Enterobacter pseudoroggenkampii", "title": "Enterobacter pseudoroggenkampii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026420145.1", "bioproject": "PRJNA224116", "biosample": "SAMN31811978", "wgs_master": "JAPMLV000000000.1", "refseq_category": "na", "taxid": "2996112", "species_taxid": "2996112", "organism_name": "Enterobacter pseudoroggenkampii", "infraspecific_name": "strain=155092", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "ASM2642014v1", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_026420145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/420/145/GCF_026420145.1_ASM2642014v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4866420", "genome_size_ungapped": "4866420", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026420145.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "4742", "protein_coding_gene_count": "4588", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter pseudoroggenkampii" ], "sample_taxid": [ "2996112" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu, Sichuan" ], "sample_host_location_id": [], "data_size": "1.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4866420", "Number of Sequences": "21", "Longest Sequences (bp)": "2727191", "N50 (bp)": "2727191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.6", "Number of CDSs": "4626", "Average Protein Length": "313.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "1", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, 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"ani": 93.1724, "matched_fragments": 1344, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 91.7944, "matched_fragments": 1377, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter quasimori", "strain": "strain=090044", "accession": "GCA_003964905.1", "taxid": 2838947, "species_taxid": 2838947, "relation_to_type": "type", "validated": true, "ani": 91.472, "matched_fragments": 1298, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 90.6835, "matched_fragments": 1317, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 89.3133, "matched_fragments": 1270, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 89.0256, "matched_fragments": 1297, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1651, "matched_fragments": 1230, "total_fragments": 1614, 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