{ "type": "genome", "identifier": "GCF_026552795.1", "organism": "Ectorhizobium quercum", "title": "Ectorhizobium quercum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese academy of forestry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026552795.1", "bioproject": "PRJNA224116", "biosample": "SAMN29814382", "wgs_master": "JANFPI000000000.1", "refseq_category": "reference genome", "taxid": "2965071", "species_taxid": "2965071", "organism_name": "Ectorhizobium quercum", "infraspecific_name": "strain=BDR2-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/30", "asm_name": "ASM2655279v1", "asm_submitter": "Chinese academy of forestry", "gbrs_paired_asm": "GCA_026552795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/552/795/GCF_026552795.1_ASM2655279v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5067365", "genome_size_ungapped": "5067365", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026552795.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4688", "protein_coding_gene_count": "4572", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-30", "dateModified": "2022-11-30", "datePublished": "2022-11-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Ectorhizobium quercum" ], "sample_taxid": [ "2965071" ], "sample_host_organism": [ "Quercus acutissima" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hefei" ], "sample_host_location_id": [], "data_size": "1.391 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5067365", "Number of Sequences": "21", "Longest Sequences (bp)": "1053881", "N50 (bp)": "818269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "4653", "Average Protein Length": "323.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.4396, "matched_fragments": 668, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.3267, "matched_fragments": 701, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 80.3223, "matched_fragments": 702, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 80.194, "matched_fragments": 743, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 80.1588, "matched_fragments": 767, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 79.9077, "matched_fragments": 634, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella curvata", "strain": "strain=C3", "accession": "GCA_022899935.1", "taxid": 1817964, "species_taxid": 1817964, "relation_to_type": "type", "validated": true, "ani": 79.8123, "matched_fragments": 612, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 79.7057, "matched_fragments": 579, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter lividus", "strain": "strain=DSM 25528", "accession": "GCA_003337715.1", "taxid": 1197950, "species_taxid": 1197950, "relation_to_type": "type", "validated": true, "ani": 79.6168, "matched_fragments": 560, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 79.559, "matched_fragments": 660, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter thiooxidans", "strain": "strain=F43B", "accession": "GCA_014126615.1", "taxid": 1969821, "species_taxid": 1969821, "relation_to_type": "type", "validated": true, "ani": 79.4552, "matched_fragments": 556, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium croatiense", "strain": "strain=13T", "accession": "GCA_019793465.1", "taxid": 2867516, "species_taxid": 2867516, "relation_to_type": "type", "validated": true, "ani": 79.4028, "matched_fragments": 643, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 79.3433, "matched_fragments": 628, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=NBRC 13257", "accession": "GCA_000696095.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 79.314, "matched_fragments": 623, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium etli", "strain": "strain=CFN 42", "accession": "GCA_000092045.1", "taxid": 29449, "species_taxid": 29449, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1434, "matched_fragments": 605, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wuzhouense", "strain": "strain=W44", "accession": "GCA_003205195.1", "taxid": 1986026, "species_taxid": 1986026, "relation_to_type": "type", "validated": true, "ani": 79.108, "matched_fragments": 557, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 79.0691, "matched_fragments": 588, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 79.0519, "matched_fragments": 546, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium salinitolerans", "strain": "strain=YIC 5082", "accession": "GCA_002008225.1", "taxid": 1183413, "species_taxid": 1183413, "relation_to_type": "type", "validated": true, "ani": 78.977, "matched_fragments": 593, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wenxiniae", "strain": "strain=DSM 100734", "accession": "GCA_014201355.1", "taxid": 1737357, "species_taxid": 1737357, "relation_to_type": "type", "validated": true, "ani": 78.8632, "matched_fragments": 573, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wenxiniae", "strain": "strain=CGMCC 1.15279", "accession": "GCA_014641515.1", "taxid": 1737357, "species_taxid": 1737357, "relation_to_type": "type", "validated": true, "ani": 78.8515, "matched_fragments": 570, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 78.814, "matched_fragments": 494, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella mediterranea", "strain": "strain=DSM 17316", "accession": "GCA_000376125.1", "taxid": 293089, "species_taxid": 293089, "relation_to_type": "type", "validated": true, "ani": 78.6237, "matched_fragments": 465, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella mediterranea", "strain": "strain=MACL11", "accession": "GCA_002043005.1", "taxid": 293089, "species_taxid": 293089, "relation_to_type": "type", "validated": true, "ani": 78.6071, "matched_fragments": 468, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014196535.1", "gtdb_species": "s__Rhizobium_B borbori", "ani": 82.7065, "matched_fragments": 906, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004341885.1", "gtdb_species": "s__Shinella granuli", "ani": 80.2026, "matched_fragments": 743, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003122325.1", "gtdb_species": "s__Rhizobium album", "ani": 80.131, "matched_fragments": 663, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177415.1", "gtdb_species": "s__Neorhizobium oryzae_A", "ani": 80.0299, "matched_fragments": 708, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002600635.1", "gtdb_species": "s__Allorhizobium sp002600635", "ani": 79.9378, "matched_fragments": 688, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012927355.1", "gtdb_species": "s__Allorhizobium sp012927355", "ani": 79.7278, "matched_fragments": 650, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007004135.1", "gtdb_species": "s__Rhizobium_A straminoryzae", "ani": 79.6898, "matched_fragments": 621, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000282095.2", "gtdb_species": "s__Neorhizobium sp000282095", "ani": 79.672, "matched_fragments": 683, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000985875.1", "gtdb_species": "s__Neorhizobium galegae_C", "ani": 79.6504, "matched_fragments": 665, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900155885.1", "gtdb_species": "s__RU20A sp900155885", "ani": 79.649, "matched_fragments": 579, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RU20A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014195095.1", "gtdb_species": "s__Rhizobium sp014195095", "ani": 79.6423, "matched_fragments": 704, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900473245.1", "gtdb_species": "s__Allorhizobium sp900473245", "ani": 79.6248, "matched_fragments": 625, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_001651875.1", "gtdb_species": "s__Sinorhizobium saheli", "ani": 79.5646, "matched_fragments": 581, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900466005.1", "gtdb_species": "s__Allorhizobium sp900466005", "ani": 79.5402, "matched_fragments": 584, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002940685.1", "gtdb_species": "s__Ensifer adhaerens_E", "ani": 79.4903, "matched_fragments": 616, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014126615.1", "gtdb_species": "s__Allorhizobium thiooxidans", "ani": 79.4711, "matched_fragments": 553, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002005205.3", "gtdb_species": "s__Agrobacterium rhizogenes_A", "ani": 79.4304, "matched_fragments": 611, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_003425685.1", "gtdb_species": "s__Neorhizobium sp003425685", "ani": 79.4164, "matched_fragments": 659, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001662075.1", "gtdb_species": "s__Rhizobium bangladeshense_B", "ani": 79.3403, "matched_fragments": 609, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000696095.1", "gtdb_species": "s__Rhizobium rhizogenes", "ani": 79.2859, "matched_fragments": 628, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 92, "status": "-" }, { "accession": "GCF_013322215.1", "gtdb_species": "s__Rhizobium rhizogenes_D", "ani": 79.2358, "matched_fragments": 575, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014197145.1", "gtdb_species": "s__Gellertiella hungarica", "ani": 79.1202, "matched_fragments": 521, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Gellertiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002968635.1", "gtdb_species": "s__Neorhizobium alkalisoli", "ani": 79.0741, "matched_fragments": 542, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002008225.1", "gtdb_species": "s__Agrobacterium salinitolerans", "ani": 78.9779, "matched_fragments": 593, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "95.71", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_014201355.1", "gtdb_species": "s__Neorhizobium wenxiniae", "ani": 78.8491, "matched_fragments": 575, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900472575.1", "gtdb_species": "s__Neorhizobium cellulosilyticum", "ani": 78.6779, "matched_fragments": 580, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002043005.1", "gtdb_species": "s__Martelella mediterranea", "ani": 78.6405, "matched_fragments": 464, "total_fragments": 1680, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "95.96", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Ectorhizobium", "quercum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }