{
    "type": "genome",
    "identifier": "GCF_026651605.1",
    "organism": "Alicyclobacillus dauci",
    "title": "Alicyclobacillus dauci",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northwest A&F University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026651605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30608894",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1475485",
        "species_taxid": "1475485",
        "organism_name": "Alicyclobacillus dauci",
        "infraspecific_name": "strain=DSM 28700",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/05",
        "asm_name": "ASM2665160v1",
        "asm_submitter": "Northwest A&F University",
        "gbrs_paired_asm": "GCA_026651605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/651/605/GCF_026651605.1_ASM2665160v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4881158",
        "genome_size_ungapped": "4881158",
        "gc_percent": "50.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_026651605.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4928",
        "protein_coding_gene_count": "4641",
        "non_coding_gene_count": "146",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-05",
    "dateModified": "2022-12-05",
    "datePublished": "2022-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alicyclobacillus dauci"
        ],
        "sample_taxid": [
            "1475485"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Shaanxi"
        ],
        "sample_host_location_id": [],
        "data_size": "1.394 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4881158",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "4632428",
        "N50 (bp)": "4632428",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.3",
        "Number of CDSs": "4902",
        "Average Protein Length": "275.0",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "33",
        "Number of tRNAs": "110",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alicyclobacillus acidoterrestris",
                "strain": "strain=DSM 3922",
                "accession": "GCA_022674245.1",
                "taxid": 1450,
                "species_taxid": 1450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6651,
                "matched_fragments": 170,
                "total_fragments": 1626,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus acidoterrestris",
                "strain": "strain=ATCC 49025",
                "accession": "GCA_000444055.1",
                "taxid": 1450,
                "species_taxid": 1450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1513,
                "matched_fragments": 142,
                "total_fragments": 1626,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus suci",
                "strain": "strain=VF-FSL-W10-0049",
                "accession": "GCA_017329615.1",
                "taxid": 2816080,
                "species_taxid": 2816080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8462,
                "matched_fragments": 145,
                "total_fragments": 1626,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000444055.1",
                "gtdb_species": "s__Alicyclobacillus acidoterrestris",
                "ani": 78.1513,
                "matched_fragments": 142,
                "total_fragments": 1626,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991715.1",
                "gtdb_species": "s__Alicyclobacillus acidoterrestris_A",
                "ani": 77.764,
                "matched_fragments": 143,
                "total_fragments": 1626,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.212,
        "cell_length": 0.41,
        "doubling_h": -0.128,
        "growth_tmp": 48.369,
        "optimum_tmp": 48.446,
        "optimum_ph": 3.958,
        "genome_size": 3433603.791,
        "gc_content": 56.964,
        "coding_genes": 3028.8,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.667,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.785,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.066,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alicyclobacillus",
        "dauci"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}