{ "type": "genome", "identifier": "GCF_026735135.1", "organism": "Clostridium aestuarii", "title": "Clostridium aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026735135.1", "bioproject": "PRJNA224116", "biosample": "SAMN31944018", "wgs_master": "JAPQER000000000.1", "refseq_category": "reference genome", "taxid": "338193", "species_taxid": "338193", "organism_name": "Clostridium aestuarii", "infraspecific_name": "strain=HY-45-18", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/07", "asm_name": "ASM2673513v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_026735135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/735/135/GCF_026735135.1_ASM2673513v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3582181", "genome_size_ungapped": "3581985", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-09", "total_gene_count": "3358", "protein_coding_gene_count": "3213", "non_coding_gene_count": "109", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-07", "dateModified": "2022-12-07", "datePublished": "2022-12-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium aestuarii" ], "sample_taxid": [ "338193" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.968 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3582181", "Number of Sequences": "29", "Longest Sequences (bp)": "954549", "N50 (bp)": "869868", "Gap Ratio (%)": "0.005472", "GCcontent (%)": "28.3", "Number of CDSs": "3249", "Average Protein Length": "316.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "9", "Number of tRNAs": "84", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium thermopalmarium", "strain": "strain=DSM 5974", "accession": "GCA_003097175.1", "taxid": 29373, "species_taxid": 29373, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0117, "matched_fragments": 268, "total_fragments": 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"below_threshold" }, { "organism_name": "Clostridium carboxidivorans", "strain": "strain=P7", "accession": "GCA_001038625.1", "taxid": 217159, "species_taxid": 217159, "relation_to_type": "type", "validated": true, "ani": 76.8799, "matched_fragments": 207, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium grantii", "strain": "strain=DSM 8605", "accession": "GCA_900129965.1", "taxid": 40575, "species_taxid": 40575, "relation_to_type": "type", "validated": true, "ani": 76.8248, "matched_fragments": 179, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium muellerianum", "strain": "strain=P21", "accession": "GCA_012926525.1", "taxid": 2716538, "species_taxid": 2716538, "relation_to_type": "type", "validated": true, "ani": 76.7685, "matched_fragments": 204, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium niameyense", "strain": "strain=MT5", "accession": "GCA_001243045.1", "taxid": 1622073, "species_taxid": 1622073, "relation_to_type": "type", "validated": true, "ani": 76.7269, "matched_fragments": 186, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanirhabdus seepicola", "strain": "strain=ZWT", "accession": "GCA_023684385.1", "taxid": 2828781, "species_taxid": 2828781, "relation_to_type": "type", "validated": true, "ani": 76.6812, "matched_fragments": 150, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium drakei", "strain": "strain=SL1", "accession": "GCA_000633595.2", "taxid": 332101, "species_taxid": 332101, "relation_to_type": "type", "validated": true, "ani": 76.6724, "matched_fragments": 200, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium algidicarnis", "strain": "strain=DSM 15099", "accession": "GCA_002934235.1", "taxid": 37659, "species_taxid": 37659, "relation_to_type": "type", "validated": true, "ani": 76.5314, "matched_fragments": 108, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, "species_taxid": 2841506, "relation_to_type": "type", "validated": true, "ani": 76.4046, "matched_fragments": 126, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium prolinivorans", "strain": "strain=PYR-10", "accession": "GCA_004011155.1", "taxid": 2769420, "species_taxid": 2769420, "relation_to_type": "type", "validated": true, "ani": 76.3592, "matched_fragments": 163, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium isatidis", "strain": "strain=DSM 15098", "accession": "GCA_002285495.1", "taxid": 182773, "species_taxid": 182773, "relation_to_type": "type", "validated": true, "ani": 76.3015, "matched_fragments": 121, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium faecium", "strain": "strain=N37", "accession": "GCA_014836835.1", "taxid": 2762223, "species_taxid": 2762223, "relation_to_type": "type", "validated": true, "ani": 76.2558, "matched_fragments": 156, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.1597, "matched_fragments": 176, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium rectalis", "strain": "strain=Marseille-P4200", "accession": "GCA_900626095.1", "taxid": 2040295, "species_taxid": 2040295, "relation_to_type": "type", "validated": true, "ani": 76.1555, "matched_fragments": 183, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium magnum", "strain": "strain=DSM 2767", "accession": "GCA_900129955.1", "taxid": 33954, "species_taxid": 33954, "relation_to_type": "type", "validated": true, "ani": 76.1534, "matched_fragments": 170, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium paraputrificum", "strain": "strain=NCTC11833", "accession": "GCA_900447045.1", "taxid": 29363, "species_taxid": 29363, "relation_to_type": "type", "validated": true, "ani": 76.1507, "matched_fragments": 119, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetani", "strain": "strain=ATCC 19406", "accession": "GCA_000762305.1", "taxid": 1513, "species_taxid": 1513, "relation_to_type": "type", "validated": true, "ani": 76.1494, "matched_fragments": 176, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetani", "strain": "strain=ATCC 19406", "accession": "GCA_900167265.1", "taxid": 1513, "species_taxid": 1513, "relation_to_type": "type", "validated": true, "ani": 76.1157, "matched_fragments": 175, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.0912, "matched_fragments": 172, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 75.9977, "matched_fragments": 151, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium akagii", "strain": "strain=DSM 12554", "accession": "GCA_000686725.1", "taxid": 91623, "species_taxid": 91623, "relation_to_type": "type", "validated": true, "ani": 75.9239, "matched_fragments": 126, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cibarium", "strain": "strain=Sa3CVN1", "accession": "GCA_014836335.1", "taxid": 2762247, "species_taxid": 2762247, "relation_to_type": "type", "validated": true, "ani": 75.6013, "matched_fragments": 130, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium celatum", "strain": "strain=DSM 1785", "accession": "GCA_000320405.1", "taxid": 36834, "species_taxid": 36834, "relation_to_type": "type", "validated": true, "ani": 75.5806, "matched_fragments": 125, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridiisalibacter paucivorans", "strain": "strain=DSM 22131", "accession": "GCA_000620125.1", 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