{ "type": "genome", "identifier": "GCF_026735165.1", "organism": "Clostridium ganghwense", "title": "Clostridium ganghwense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026735165.1", "bioproject": "PRJNA224116", "biosample": "SAMN31953020", "wgs_master": "JAPQES000000000.1", "refseq_category": "reference genome", "taxid": "312089", "species_taxid": "312089", "organism_name": "Clostridium ganghwense", "infraspecific_name": "strain=HY-42-06", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/07", "asm_name": "ASM2673516v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_026735165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/735/165/GCF_026735165.1_ASM2673516v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4118181", "genome_size_ungapped": "4117890", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-09", "total_gene_count": "3992", "protein_coding_gene_count": "3819", "non_coding_gene_count": "150", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-07", "dateModified": "2022-12-07", "datePublished": "2022-12-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium ganghwense" ], "sample_taxid": [ "312089" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.117 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4118181", "Number of Sequences": "30", "Longest Sequences (bp)": "1434029", "N50 (bp)": "474094", "Gap Ratio (%)": "0.007066", "GCcontent (%)": "29.0", "Number of CDSs": "3860", "Average Protein Length": "308.2", "Coding Ratio (%)": "86.7", "Number of rRNAs": "11", "Number of tRNAs": "114", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium thermopalmarium", "strain": "strain=DSM 5974", "accession": "GCA_002995795.1", "taxid": 29373, "species_taxid": 29373, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0614, "matched_fragments": 284, 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"organism_name": "Clostridium drakei", "strain": "strain=SL1", "accession": "GCA_003096175.1", "taxid": 332101, "species_taxid": 332101, "relation_to_type": "type", "validated": true, "ani": 76.563, "matched_fragments": 234, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tepidum", "strain": "strain=IEH 97212", "accession": "GCA_002008345.1", "taxid": 1962263, "species_taxid": 1962263, "relation_to_type": "type", "validated": true, "ani": 76.5226, "matched_fragments": 225, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium drakei", "strain": "strain=SL1", "accession": "GCA_000633595.2", "taxid": 332101, "species_taxid": 332101, "relation_to_type": "type", "validated": true, "ani": 76.4623, "matched_fragments": 226, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sarcina ventriculi", "strain": "strain=NCTC12966", "accession": "GCA_900456775.1", "taxid": 1267, "species_taxid": 1267, "relation_to_type": "type", "validated": true, "ani": 76.4619, "matched_fragments": 141, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fermenticellae", "strain": "strain=JN500901", "accession": "GCA_003600355.1", "taxid": 2068654, "species_taxid": 2068654, "relation_to_type": "type", "validated": true, "ani": 76.4519, "matched_fragments": 107, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 76.3768, "matched_fragments": 177, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, 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