{ "type": "genome", "identifier": "GCF_026735315.1", "organism": "Hoeflea prorocentri", "title": "Hoeflea prorocentri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026735315.1", "bioproject": "PRJNA224116", "biosample": "SAMN29588685", "wgs_master": "JAPPVY000000000.1", "refseq_category": "na", "taxid": "1922333", "species_taxid": "1922333", "organism_name": "Hoeflea prorocentri", "infraspecific_name": "strain=PM5-8", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/07", "asm_name": "ASM2673531v1", "asm_submitter": "Hohai University", "gbrs_paired_asm": "GCA_026735315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/735/315/GCF_026735315.1_ASM2673531v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5037559", "genome_size_ungapped": "5037559", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026735315.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4734", "protein_coding_gene_count": "4654", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-07", "dateModified": "2022-12-07", "datePublished": "2022-12-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Hoeflea prorocentri" ], "sample_taxid": [ "1922333" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: southern Taiwan" ], "sample_host_location_id": 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"below_threshold" }, { "organism_name": "Rhizobium anhuiense", "strain": "strain=CGMCC 1.12621", "accession": "GCA_014638185.1", "taxid": 1184720, "species_taxid": 1184720, "relation_to_type": "type", "validated": true, "ani": 76.8504, "matched_fragments": 208, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium giardinii", "strain": "strain=H152", "accession": "GCA_000379605.1", "taxid": 56731, "species_taxid": 56731, "relation_to_type": "type", "validated": true, "ani": 76.8427, "matched_fragments": 210, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter thiooxidans", "strain": "strain=F43B", "accession": "GCA_014126615.1", "taxid": 1969821, "species_taxid": 1969821, "relation_to_type": "type", "validated": true, "ani": 76.8, "matched_fragments": 185, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium wenxiniae", 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"GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 76.7572, "matched_fragments": 170, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium indicum", "strain": "strain=JKLM 12A2", "accession": "GCA_005862305.2", "taxid": 2583231, "species_taxid": 2583231, "relation_to_type": "type", "validated": true, "ani": 76.7198, "matched_fragments": 205, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium dioscoreae", "strain": "strain=S-93", "accession": "GCA_009176305.1", "taxid": 2653122, "species_taxid": 2653122, "relation_to_type": "type", "validated": true, "ani": 76.7109, "matched_fragments": 180, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, 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76.5118, "matched_fragments": 223, "total_fragments": 1678, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004959855.1", "gtdb_species": "s__SPNT01 sp004959855", "ani": 78.8552, "matched_fragments": 715, "total_fragments": 1678, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__SPNT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017794825.1", "gtdb_species": "s__SPNT01 sp017794825", "ani": 77.486, "matched_fragments": 305, "total_fragments": 1678, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__SPNT01", "ani_circumscription_radius": 95.0, 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