{ "type": "genome", "identifier": "GCF_026870155.1", "organism": "Flavobacterium marginilacus", "title": "Flavobacterium marginilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026870155.1", "bioproject": "PRJNA224116", "biosample": "SAMN32064673", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3003256", "species_taxid": "3003256", "organism_name": "Flavobacterium marginilacus", "infraspecific_name": "strain=IMCC34673", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/06", "asm_name": "ASM2687015v3", "asm_submitter": "Inha Univ.", "gbrs_paired_asm": "GCA_026870155.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/870/155/GCF_026870155.1_ASM2687015v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5319561", "genome_size_ungapped": "5319561", "gc_percent": "34.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_026870155.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4432", "protein_coding_gene_count": "4314", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-06", "dateModified": "2023-04-06", "datePublished": "2023-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium marginilacus" ], "sample_taxid": [ "3003256" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Chungjuho lake" ], "sample_host_location_id": [], "data_size": "1.467 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5319561", "Number of Sequences": "2", "Longest Sequences (bp)": "5315960", "N50 (bp)": "5315960", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "4336", "Average Protein Length": "352.4", "Coding Ratio (%)": "86.2", "Number of rRNAs": "15", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 85.7143, "matched_fragments": 1087, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 81.6155, "matched_fragments": 830, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 81.3417, "matched_fragments": 828, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_001761465.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 80.9499, "matched_fragments": 748, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_000735535.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 80.915, "matched_fragments": 697, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 80.2441, "matched_fragments": 667, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 78.9542, "matched_fragments": 437, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 78.8798, "matched_fragments": 483, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.8477, "matched_fragments": 533, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.7594, "matched_fragments": 493, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.7327, "matched_fragments": 479, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 78.7013, "matched_fragments": 469, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 78.6762, "matched_fragments": 530, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 78.625, "matched_fragments": 426, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_003148525.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 78.5572, "matched_fragments": 481, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 78.5119, "matched_fragments": 461, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.4888, "matched_fragments": 524, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pokkalii", "strain": "strain=L1I52", "accession": "GCA_014596575.1", "taxid": 1940408, "species_taxid": 1940408, "relation_to_type": "type", "validated": true, "ani": 78.299, "matched_fragments": 410, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.4044, "matched_fragments": 166, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015351475.1", "gtdb_species": "s__Flavobacterium sp015351475", "ani": 97.3707, "matched_fragments": 1447, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003385115.1", "gtdb_species": "s__Flavobacterium aquicola", "ani": 85.6953, "matched_fragments": 1089, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797935.1", "gtdb_species": "s__Flavobacterium sp002797935", "ani": 84.3951, "matched_fragments": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "marginilacus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }