{
    "type": "genome",
    "identifier": "GCF_026914305.1",
    "organism": "Caldicellulosiruptor acetigenus",
    "title": "Caldicellulosiruptor acetigenus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "North Carolina State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_026914305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN31840423",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "301953",
        "species_taxid": "301953",
        "organism_name": "Caldicellulosiruptor acetigenus",
        "infraspecific_name": "strain=DSM 7040",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/15",
        "asm_name": "ASM2691430v1",
        "asm_submitter": "North Carolina State University",
        "gbrs_paired_asm": "GCA_026914305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/914/305/GCF_026914305.1_ASM2691430v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2739610",
        "genome_size_ungapped": "2739610",
        "gc_percent": "36.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-25",
        "total_gene_count": "2642",
        "protein_coding_gene_count": "2538",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-15",
    "dateModified": "2022-12-15",
    "datePublished": "2022-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caldicellulosiruptor acetigenus"
        ],
        "sample_taxid": [
            "301953"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iceland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.760 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2739610",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2739610",
        "N50 (bp)": "2739610",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.3",
        "Number of CDSs": "2609",
        "Average Protein Length": "311.1",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Caldicellulosiruptor acetigenus",
                "strain": "strain=DSM 7040",
                "accession": "GCA_000421725.1",
                "taxid": 301953,
                "species_taxid": 301953,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 845,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Caldicellulosiruptor hydrothermalis",
                "strain": "strain=108",
                "accession": "GCA_000166355.1",
                "taxid": 413888,
                "species_taxid": 413888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6866,
                "matched_fragments": 724,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldicellulosiruptor bescii",
                "strain": "strain=DSM 6725",
                "accession": "GCA_000022325.1",
                "taxid": 31899,
                "species_taxid": 31899,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8763,
                "matched_fragments": 699,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldicellulosiruptor kronotskyensis",
                "strain": "strain=2002",
                "accession": "GCA_000166775.1",
                "taxid": 413889,
                "species_taxid": 413889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7294,
                "matched_fragments": 695,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldicellulosiruptor obsidiansis",
                "strain": "strain=OB47",
                "accession": "GCA_000145215.1",
                "taxid": 717609,
                "species_taxid": 717609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9427,
                "matched_fragments": 667,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldicellulosiruptor owensensis",
                "strain": "strain=OL",
                "accession": "GCA_000166335.1",
                "taxid": 55205,
                "species_taxid": 55205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5192,
                "matched_fragments": 643,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldicellulosiruptor diazotrophicus",
                "strain": "strain=YA01",
                "accession": "GCA_017347585.1",
                "taxid": 2806205,
                "species_taxid": 2806205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.4734,
                "matched_fragments": 678,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000421725.1",
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                "matched_fragments": 845,
                "total_fragments": 913,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000166355.1",
                "gtdb_species": "s__Caldicellulosiruptor hydrothermalis",
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                "matched_fragments": 724,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000022325.1",
                "gtdb_species": "s__Caldicellulosiruptor bescii",
                "ani": 90.8802,
                "matched_fragments": 700,
                "total_fragments": 913,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
                "ani_circumscription_radius": 96.1491,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_000166775.1",
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                "matched_fragments": 697,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
                "ani_circumscription_radius": 96.1491,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000145215.1",
                "gtdb_species": "s__Caldicellulosiruptor obsidiansis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000955725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
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                "mean_intra_species_ani": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
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            },
            {
                "accession": "GCF_017347585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermoanaerobacteria;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "rRNA16S_genes": 3.0,
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        "mesophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "acetigenus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}