{ "type": "genome", "identifier": "GCF_026967475.1", "organism": "Rouxiella chamberiensis", "title": "Rouxiella chamberiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Charles Sturt University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_026967475.1", "bioproject": "PRJNA224116", "biosample": "SAMN32064795", "wgs_master": "na", "refseq_category": "na", "taxid": "1513468", "species_taxid": "1513468", "organism_name": "Rouxiella chamberiensis", "infraspecific_name": "strain=DSM 28324", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/18", "asm_name": "ASM2696747v1", "asm_submitter": "Charles Sturt University", "gbrs_paired_asm": "GCA_026967475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/967/475/GCF_026967475.1_ASM2696747v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4639296", "genome_size_ungapped": "4639296", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-06", "total_gene_count": "4343", "protein_coding_gene_count": "3537", "non_coding_gene_count": "106", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-18", "dateModified": "2022-12-18", "datePublished": "2022-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Rouxiella chamberiensis" ], "sample_taxid": [ "1513468" ], "sample_host_organism": [ "Not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Chambery" ], "sample_host_location_id": [], "data_size": "1.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4639296", "Number of Sequences": "1", "Longest Sequences (bp)": "4639296", "N50 (bp)": "4639296", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "4658", "Average Protein Length": "283.2", "Coding Ratio (%)": "85.3", "Number of rRNAs": "22", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rouxiella chamberiensis", "strain": "strain=130333", "accession": "GCA_000951135.1", "taxid": 1513468, "species_taxid": 1513468, "relation_to_type": "type", "validated": true, "ani": 99.9569, "matched_fragments": 1525, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rouxiella badensis", "strain": "strain=DSM 100043", "accession": "GCA_002093665.1", "taxid": 1646377, "species_taxid": 1646377, "relation_to_type": "type", "validated": true, "ani": 82.7893, "matched_fragments": 980, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rouxiella silvae", "strain": "strain=213", "accession": "GCA_002093625.1", "taxid": 1646373, "species_taxid": 1646373, "relation_to_type": "type", "validated": true, "ani": 82.3888, "matched_fragments": 920, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rouxiella aceris", "strain": "strain=SAP-1", "accession": "GCA_012933545.1", "taxid": 2703884, "species_taxid": 2703884, "relation_to_type": "type", "validated": true, "ani": 81.1884, "matched_fragments": 774, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ewingella americana", "strain": "strain=CCUG 14506T", "accession": "GCA_008693045.1", "taxid": 41202, "species_taxid": 41202, "relation_to_type": "type", "validated": true, "ani": 80.2938, "matched_fragments": 642, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella variigena", "strain": "strain=CIP 105588", "accession": "GCA_003610915.1", "taxid": 574964, "species_taxid": 574964, "relation_to_type": "type", "validated": true, "ani": 80.2629, "matched_fragments": 694, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, "relation_to_type": "type", "validated": true, "ani": 80.0996, "matched_fragments": 693, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella laticis", "strain": "strain=SAP-17", "accession": "GCA_015644585.1", "taxid": 2787622, "species_taxid": 2787622, "relation_to_type": "type", "validated": true, "ani": 80.0758, "matched_fragments": 691, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella contaminans", "strain": "strain=Lac-M11", "accession": "GCA_011065485.1", "taxid": 2703882, "species_taxid": 2703882, "relation_to_type": "type", "validated": true, "ani": 80.0296, "matched_fragments": 686, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella ecdela", "strain": "strain=FRB 231", "accession": "GCA_019049625.1", "taxid": 2816250, "species_taxid": 2816250, "relation_to_type": "type", "validated": true, "ani": 80.0145, "matched_fragments": 673, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bonaserana", "strain": "strain=H11b", "accession": "GCA_019049675.1", "taxid": 2816248, "species_taxid": 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