{ "type": "genome", "identifier": "GCF_027111255.2", "organism": "Flavobacterium flavigenum", "title": "Flavobacterium flavigenum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027111255.2", "bioproject": "PRJNA224116", "biosample": "SAMN32064675", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3003258", "species_taxid": "3003258", "organism_name": "Flavobacterium flavigenum", "infraspecific_name": "strain=IMCC34775", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/06", "asm_name": "ASM2711125v2", "asm_submitter": "Inha Univ.", "gbrs_paired_asm": "GCA_027111255.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/111/255/GCF_027111255.2_ASM2711125v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5427275", "genome_size_ungapped": "5427275", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027111255.2-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4518", "protein_coding_gene_count": "4409", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-06", "dateModified": "2023-04-06", "datePublished": "2023-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium flavigenum" ], "sample_taxid": [ "3003258" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Seoamcheon stream" ], "sample_host_location_id": [], "data_size": "1.504 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5427275", "Number of Sequences": "1", "Longest Sequences (bp)": "5427275", "N50 (bp)": "5427275", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "4420", "Average Protein Length": "358.5", "Coding Ratio (%)": "87.6", "Number of rRNAs": "15", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 93.1735, "matched_fragments": 1325, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=CGMCC 1.16060", "accession": "GCA_014644395.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 87.039, "matched_fragments": 1282, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=THG-AG6.4", "accession": "GCA_010645075.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 87.0352, "matched_fragments": 1295, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 85.8801, "matched_fragments": 1307, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviatile", "strain": "strain=TAPY14", "accession": "GCA_010645065.1", "taxid": 1862387, "species_taxid": 1862387, "relation_to_type": "type", "validated": true, "ani": 85.7673, "matched_fragments": 1102, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 84.9639, "matched_fragments": 1278, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ajazii", "strain": "strain=SSM4.2", "accession": "GCA_010614725.1", "taxid": 2692318, "species_taxid": 2692318, "relation_to_type": "type", "validated": true, "ani": 84.6627, "matched_fragments": 1175, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 81.878, "matched_fragments": 839, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 81.8351, "matched_fragments": 905, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 81.7402, "matched_fragments": 900, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 81.7109, "matched_fragments": 842, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.6881, "matched_fragments": 852, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.4797, "matched_fragments": 890, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.5289, "matched_fragments": 170, "total_fragments": 1809, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010645075.1", "gtdb_species": "s__Flavobacterium limi", "ani": 87.038, "matched_fragments": 1294, "total_fragments": 1809, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003202405.1", "gtdb_species": "s__Flavobacterium hydrophilum", "ani": 85.8801, "matched_fragments": 1307, "total_fragments": 1809, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010645065.1", "gtdb_species": "s__Flavobacterium fluviatile", "ani": 85.7673, "matched_fragments": 1102, "total_fragments": 1809, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000735715.2", "gtdb_species": "s__Flavobacterium chungangense", "ani": 85.0182, "matched_fragments": 1255, "total_fragments": 1809, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "flavigenum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }