{ "type": "genome", "identifier": "GCF_027111275.1", "organism": "Flavobacterium luteolum", "title": "Flavobacterium luteolum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027111275.1", "bioproject": "PRJNA224116", "biosample": "SAMN32064706", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3003259", "species_taxid": "3003259", "organism_name": "Flavobacterium luteolum", "infraspecific_name": "strain=IMCC34776", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/06", "asm_name": "ASM2711127v3", "asm_submitter": "Inha Univ.", "gbrs_paired_asm": "GCA_027111275.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/111/275/GCF_027111275.1_ASM2711127v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5356995", "genome_size_ungapped": "5356995", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027111275.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4532", "protein_coding_gene_count": "4438", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-06", "dateModified": "2023-04-06", "datePublished": "2023-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium luteolum" ], "sample_taxid": [ "3003259" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 88.911, "matched_fragments": 1365, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium anhuiense", "strain": "strain=CGMCC 1.6859", "accession": "GCA_900101855.1", "taxid": 459526, "species_taxid": 459526, "relation_to_type": "suspected-type", "validated": true, "ani": 88.4434, "matched_fragments": 1332, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium quisquiliarum", "strain": "strain=EA-12", "accession": "GCA_019308285.1", "taxid": 1834436, "species_taxid": 1834436, "relation_to_type": "type", "validated": true, "ani": 85.5745, "matched_fragments": 1272, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 85.5093, "matched_fragments": 1286, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 85.5012, "matched_fragments": 1323, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 85.4225, "matched_fragments": 1260, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chungbukense", "strain": "strain=CS100", "accession": "GCA_020805785.1", "taxid": 877464, "species_taxid": 877464, "relation_to_type": "type", "validated": true, "ani": 85.3695, "matched_fragments": 1261, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.6893, "matched_fragments": 1021, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.6193, "matched_fragments": 1115, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 83.6078, "matched_fragments": 1070, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ajazii", "strain": "strain=SSM4.2", "accession": "GCA_010614725.1", "taxid": 2692318, "species_taxid": 2692318, "relation_to_type": "type", "validated": true, "ani": 82.0376, "matched_fragments": 910, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.3938, "matched_fragments": 185, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013388355.1", "gtdb_species": "s__Flavobacterium sp013388355", "ani": 94.8531, "matched_fragments": 1089, "total_fragments": 1785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254585.1", "gtdb_species": "s__Flavobacterium sharifuzzamanii", "ani": 90.6852, "matched_fragments": 1419, "total_fragments": 1785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"s__Flavobacterium sp002303885", "ani": 88.8709, "matched_fragments": 1390, "total_fragments": 1785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004151235.1", "gtdb_species": "s__Flavobacterium anhuiense_A", "ani": 88.8303, "matched_fragments": 1367, "total_fragments": 1785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101855.1", "gtdb_species": "s__Flavobacterium anhuiense", 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