{ "type": "genome", "identifier": "GCF_027111335.1", "organism": "Flavobacterium aquiphilum", "title": "Flavobacterium aquiphilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027111335.1", "bioproject": "PRJNA224116", "biosample": "SAMN32064709", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3003261", "species_taxid": "3003261", "organism_name": "Flavobacterium aquiphilum", "infraspecific_name": "strain=IMCC34779", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/21", "asm_name": "ASM2711133v2", "asm_submitter": "Inha Univ.", "gbrs_paired_asm": "GCA_027111335.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/111/335/GCF_027111335.1_ASM2711133v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5054800", "genome_size_ungapped": "5054800", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027111335.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4117", "protein_coding_gene_count": "4021", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-21", "dateModified": "2023-04-21", "datePublished": "2023-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium aquiphilum" ], "sample_taxid": [ "3003261" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Seoamcheon stream" ], "sample_host_location_id": [], "data_size": "1.406 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5054800", "Number of Sequences": "1", "Longest Sequences (bp)": "5054800", "N50 (bp)": "5054800", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.1", "Number of CDSs": "4040", "Average Protein Length": "360.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "15", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_001761465.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 82.8817, "matched_fragments": 969, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_000735535.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 82.8488, "matched_fragments": 921, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 82.4592, "matched_fragments": 920, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 81.6648, "matched_fragments": 868, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 81.1136, "matched_fragments": 809, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 80.4798, "matched_fragments": 703, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 79.1208, "matched_fragments": 454, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 79.1067, "matched_fragments": 446, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 17797", "accession": "GCA_003003155.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 78.5578, "matched_fragments": 385, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 19729", "accession": "GCA_900129705.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 78.53, "matched_fragments": 390, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.4956, "matched_fragments": 458, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.4913, "matched_fragments": 483, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 78.4493, "matched_fragments": 398, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 78.4298, "matched_fragments": 466, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.4181, "matched_fragments": 469, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.3892, "matched_fragments": 507, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.6588, "matched_fragments": 157, "total_fragments": 1684, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001761465.1", "gtdb_species": "s__Flavobacterium gilvum", "ani": 82.8475, "matched_fragments": 971, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013284035.1", "gtdb_species": "s__Flavobacterium sp003096795", "ani": 82.6543, "matched_fragments": 957, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015351475.1", "gtdb_species": "s__Flavobacterium sp015351475", "ani": 82.5527, "matched_fragments": 964, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254745.1", "gtdb_species": "s__Flavobacterium aquariorum", "ani": 82.4591, "matched_fragments": 920, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002001005.1", "gtdb_species": "s__Flavobacterium sp002001005", "ani": 82.2146, "matched_fragments": 904, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797935.1", "gtdb_species": "s__Flavobacterium sp002797935", "ani": 81.1816, "matched_fragments": 945, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003385115.1", "gtdb_species": "s__Flavobacterium aquicola", "ani": 81.1138, "matched_fragments": 808, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813295.1", "gtdb_species": "s__Flavobacterium sp002813295", "ani": 80.5881, "matched_fragments": 787, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097655.1", "gtdb_species": "s__Flavobacterium laiguense", "ani": 80.4671, "matched_fragments": 705, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097385.1", "gtdb_species": "s__Flavobacterium sp007097385", "ani": 80.2137, "matched_fragments": 727, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129705.1", "gtdb_species": "s__Flavobacterium granuli", "ani": 78.5402, "matched_fragments": 388, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000737695.1", "gtdb_species": "s__Flavobacterium hydatis", "ani": 78.4395, "matched_fragments": 399, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002217355.1", "gtdb_species": "s__Flavobacterium oncorhynchi", "ani": 78.4385, "matched_fragments": 465, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.71", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900129795.1", "gtdb_species": "s__Flavobacterium sp900129795", "ani": 78.4038, "matched_fragments": 523, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011365745.1", "gtdb_species": "s__Flavobacterium turcicum", "ani": 78.2219, "matched_fragments": 310, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900107635.1", "gtdb_species": "s__Flavobacterium gillisiae", "ani": 78.107, "matched_fragments": 343, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900299535.1", "gtdb_species": "s__Aquimarina sp900299535", "ani": 75.8775, "matched_fragments": 88, "total_fragments": 1684, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.11", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "aquiphilum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }