{ "type": "genome", "identifier": "GCF_027111355.2", "organism": "Flavobacterium eburneipallidum", "title": "Flavobacterium eburneipallidum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027111355.2", "bioproject": "PRJNA224116", "biosample": "SAMN32064747", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3003263", "species_taxid": "3003263", "organism_name": "Flavobacterium eburneipallidum", "infraspecific_name": "strain=IMCC36793", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/21", "asm_name": "ASM2711135v2", "asm_submitter": "Inha Univ.", "gbrs_paired_asm": "GCA_027111355.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/111/355/GCF_027111355.2_ASM2711135v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3845436", "genome_size_ungapped": "3845436", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027111355.2-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "3251", "protein_coding_gene_count": "3181", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-21", "dateModified": "2023-04-21", "datePublished": "2023-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium eburneipallidum" ], "sample_taxid": [ "3003263" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Seoamcheon stream" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3845436", "Number of Sequences": "1", "Longest Sequences (bp)": "3845436", "N50 (bp)": "3845436", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.0", "Number of CDSs": "3199", "Average Protein Length": "357.3", "Coding Ratio (%)": "89.2", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 82.4698, "matched_fragments": 727, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 81.766, "matched_fragments": 720, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 81.4501, "matched_fragments": 617, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 80.6378, "matched_fragments": 565, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 80.1159, "matched_fragments": 513, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 79.8619, "matched_fragments": 590, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 79.619, "matched_fragments": 519, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 79.2321, "matched_fragments": 466, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 79.2055, "matched_fragments": 433, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 79.185, "matched_fragments": 478, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": 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2903098, "relation_to_type": "type", "validated": true, "ani": 78.5919, "matched_fragments": 401, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.4757, "matched_fragments": 424, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.4545, "matched_fragments": 441, "total_fragments": 1281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", 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