{ "type": "genome", "identifier": "GCF_027571405.1", "organism": "Methylocystis parvus OBBP", "title": "Methylocystis parvus OBBP", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Nottingham", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027571405.1", "bioproject": "PRJNA224116", "biosample": "SAMN26378616", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1134912", "species_taxid": "134", "organism_name": "Methylocystis parvus OBBP", "infraspecific_name": "strain=OBBP", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/05", "asm_name": "ASM2757140v1", "asm_submitter": "University of Nottingham", "gbrs_paired_asm": "GCA_027571405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/571/405/GCF_027571405.1_ASM2757140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4529117", "genome_size_ungapped": "4529117", "gc_percent": "63.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027571405.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4399", "protein_coding_gene_count": "4265", "non_coding_gene_count": "58", "pubmed_id": "36951565" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-05", "dateModified": "2023-01-05", "datePublished": "2023-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylocystis parvus OBBP" ], "sample_taxid": [ "1134912" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: 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{ "organism_name": "Methylosinus sporium", "strain": "strain=DSM 17706", "accession": "GCA_009811675.1", "taxid": 428, "species_taxid": 428, "relation_to_type": "type", "validated": true, "ani": 79.3287, "matched_fragments": 577, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_000178815.2", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 79.2933, "matched_fragments": 590, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus sporium", "strain": "strain=DSM 17706", "accession": "GCA_003113265.1", "taxid": 428, "species_taxid": 428, "relation_to_type": "type", "validated": true, "ani": 79.2214, "matched_fragments": 549, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", 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600331, "species_taxid": 600331, "relation_to_type": "type", "validated": true, "ani": 77.0182, "matched_fragments": 216, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia granuli", "strain": "strain=Ko04", "accession": "GCA_000380505.1", "taxid": 363259, "species_taxid": 363259, "relation_to_type": "type", "validated": true, "ani": 76.9733, "matched_fragments": 221, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 76.909, "matched_fragments": 254, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": 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