{ "type": "genome", "identifier": "GCF_027587205.1", "organism": "Solirubrobacter ginsenosidimutans", "title": "Solirubrobacter ginsenosidimutans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Medical Sciences & Peking Union Medical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027587205.1", "bioproject": "PRJNA224116", "biosample": "SAMN31521109", "wgs_master": "JAPDOD000000000.1", "refseq_category": "reference genome", "taxid": "490573", "species_taxid": "490573", "organism_name": "Solirubrobacter ginsenosidimutans", "infraspecific_name": "strain=DSM 21036", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/06", "asm_name": "ASM2758720v1", "asm_submitter": "Chinese Academy of Medical Sciences & Peking Union Medical College", "gbrs_paired_asm": "GCA_027587205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/587/205/GCF_027587205.1_ASM2758720v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9690639", "genome_size_ungapped": "9690639", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027587205.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8965", "protein_coding_gene_count": "8773", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-06", "dateModified": "2023-01-06", "datePublished": "2023-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirubrobacter ginsenosidimutans" ], "sample_taxid": [ "490573" ], 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"matched_fragments": 700, "total_fragments": 3155, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 76.15, "matched_fragments": 635, "total_fragments": 3155, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 6.48, "strain_heterogeneity": 83.33 }, "gtdb_result": [ { "accession": "GCF_000423665.1", "gtdb_species": "s__Solirubrobacter soli", "ani": 84.8998, "matched_fragments": 2112, "total_fragments": 3155, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Solirubrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 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"gtdb_species": "s__VAWY01 sp005888335", "ani": 76.9115, "matched_fragments": 883, "total_fragments": 3155, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__VAWY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.078, "cell_length": 0.161, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 26.5, "optimum_ph": 8.0, "genome_size": 8224731.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Solirubrobacter", "ginsenosidimutans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }