{ "type": "genome", "identifier": "GCF_027604915.1", "organism": "Streptomonospora mangrovi", "title": "Streptomonospora mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027604915.1", "bioproject": "PRJNA224116", "biosample": "SAMN22210716", "wgs_master": "JAJAQC000000000.1", "refseq_category": "reference genome", "taxid": "2883123", "species_taxid": "2883123", "organism_name": "Streptomonospora mangrovi", "infraspecific_name": "strain=S1-112", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ASM2760491v1", "asm_submitter": "Nanjing Normal University", "gbrs_paired_asm": "GCA_027604915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/604/915/GCF_027604915.1_ASM2760491v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6364328", "genome_size_ungapped": "6364328", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027604915.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5546", "protein_coding_gene_count": "5409", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomonospora mangrovi" ], "sample_taxid": [ "2883123" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan" ], "sample_host_location_id": [], "data_size": "1.677 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6364328", "Number of Sequences": "122", "Longest Sequences (bp)": "273330", "N50 (bp)": "102411", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.6", "Number of CDSs": "5617", "Average Protein Length": "315.9", "Coding Ratio (%)": "83.6", "Number of rRNAs": "5", "Number of tRNAs": "78", "Number of CRISPRs": "18" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 82.9912, "matched_fragments": 1271, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 82.9477, "matched_fragments": 1230, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora salina", "strain": "strain=DSM 44593", "accession": "GCA_014204715.1", "taxid": 104205, "species_taxid": 104205, "relation_to_type": "type", "validated": true, "ani": 82.5575, "matched_fragments": 1181, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis mwathae", "strain": "strain=DSM 46659", "accession": "GCA_014201195.1", "taxid": 1472723, "species_taxid": 1472723, "relation_to_type": "type", "validated": true, "ani": 81.1579, "matched_fragments": 1016, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 80.8115, "matched_fragments": 1095, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", "taxid": 1246458, "species_taxid": 1246458, "relation_to_type": "type", "validated": true, "ani": 80.7024, "matched_fragments": 1170, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida cellulosilytica", "strain": "strain=TB100", "accession": "GCA_001517975.1", "taxid": 144786, "species_taxid": 144786, "relation_to_type": "type", "validated": true, "ani": 80.582, "matched_fragments": 841, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 80.5513, "matched_fragments": 1219, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.1969, "matched_fragments": 890, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 80.173, "matched_fragments": 898, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=YIM 90462", "accession": "GCA_001660385.1", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.1641, "matched_fragments": 893, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 80.0878, "matched_fragments": 962, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 79.5227, "matched_fragments": 918, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, 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