{ "type": "genome", "identifier": "GCF_027706725.1", "organism": "Nocardiopsis endophytica", "title": "Nocardiopsis endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027706725.1", "bioproject": "PRJNA224116", "biosample": "SAMN32289978", "wgs_master": "JAQFWQ000000000.1", "refseq_category": "reference genome", "taxid": "3018445", "species_taxid": "3018445", "organism_name": "Nocardiopsis endophytica", "infraspecific_name": "strain=RSe5-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ASM2770672v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_027706725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/706/725/GCF_027706725.1_ASM2770672v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7259403", "genome_size_ungapped": "7259403", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "211", "contig_count": "211", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027706725.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6413", "protein_coding_gene_count": "6301", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis endophytica" ], "sample_taxid": [ "3018445" ], "sample_host_organism": [ "Sesuvium portulacastrum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.942 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7259403", "Number of Sequences": "211", "Longest Sequences (bp)": "161127", "N50 (bp)": "53911", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.7", "Number of CDSs": "6449", "Average Protein Length": "319.8", "Coding Ratio (%)": "85.2", "Number of rRNAs": "4", "Number of tRNAs": "72", "Number of CRISPRs": "14" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 92.9239, "matched_fragments": 1815, 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"status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 80.9519, "matched_fragments": 1009, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_000341165.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 80.944, "matched_fragments": 934, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 80.5677, "matched_fragments": 980, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 80.4252, "matched_fragments": 1017, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida cellulosilytica", "strain": "strain=TB100", "accession": "GCA_001517975.1", "taxid": 144786, "species_taxid": 144786, "relation_to_type": "type", "validated": true, "ani": 80.2354, "matched_fragments": 781, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.0928, "matched_fragments": 988, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.0468, "matched_fragments": 1023, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 79.9987, "matched_fragments": 1039, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 79.9118, "matched_fragments": 964, "total_fragments": 2315, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", 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